PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05510_BGI-A2_v1.0
Common NameF383_15785
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 261aa    MW: 28990.6 Da    PI: 10.0932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05510_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.7e-1458102347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 +WT+eE++l++ + k+ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Cotton_A_05510_BGI-A2_v1.0  58 PWTEEEHKLFLLGLKKVGKGDWRGISRNFVKTRTPTQVASHAQKY 102
                                 8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.26251107IPR017930Myb domain
SuperFamilySSF466893.51E-1753108IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1654105IPR006447Myb domain, plants
SMARTSM007179.7E-1155105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-1157102IPR009057Homeodomain-like
PfamPF002491.6E-1158102IPR001005SANT/Myb domain
CDDcd001675.13E-1058103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLFGVRVMEG SFRKSVSMNN LSQFDQPHVS NADAGYASDD VLHGSGIGRS RERKRGVPWT  60
EEEHKLFLLG LKKVGKGDWR GISRNFVKTR TPTQVASHAQ KYFLRRNNLN RRRRRSSLFD  120
ITTDSFINST ILEEDEVVHQ ENVSSPQMNG FSMPTTFPAT LSLTDLSVTE NNYSTENRIS  180
RPPSPKANTS SYLIRPIPVL PVPPSSKMAD LNLNQKAEED RLPLSLKLST PSADEQSTAA  240
AHSSTLVVMS NGDNNSIISV A
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629638.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B09e-52MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0B0N9430.0A0A0B0N943_GOSAR; Transcription factor MYB1R1
STRINGGorai.007G371900.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97912636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.22e-48MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]