PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05449_BGI-A2_v1.0 | ||||||||
Common Name | F383_23667 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 369aa MW: 40943.4 Da PI: 6.8189 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++v+ +G g+W+++++ g+ R++k+c++rw +yl Cotton_A_05449_BGI-A2_v1.0 17 RGLWSPEEDEKLINYVTTYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 64 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.3 | 2.2e-15 | 70 | 112 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ Cotton_A_05449_BGI-A2_v1.0 70 RGSFSPQEAALIIELHSILGNR-WAQIAKHLP-GRTDNEVKNFWN 112 899*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-27 | 9 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.102 | 12 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-16 | 17 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.25E-12 | 20 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 68 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.263 | 69 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 70 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.95E-11 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MMGHGHHSCC NKQKVKRGLW SPEEDEKLIN YVTTYGHGCW SSVPKLAGLQ RCGKSCRLRW 60 INYLRPDLKR GSFSPQEAAL IIELHSILGN RWAQIAKHLP GRTDNEVKNF WNSSIKKKFI 120 SHEAPALASF ADVHNFKSPE EAVDFVSLNV NPSLILSDQR DQLYLSPSLL QSFAQHHADF 180 KSNPSGDNVD FIHHHFPLTP MLPPPLSSAS SLDPSWPLPF VTPQHDIDHH QYKKHHVPVF 240 SNEVVHDIFD EKLMNSTAAV NLYHHPLMAA QTVPKLCEIL EGDLCNMPLT SVSLENIDPL 300 GSRLSTCLPI SAGSSYAHDM VVATNQMEFI DTIITSMPSA SSSSSSSLSA LSSGQYITNP 360 NLPSGGWDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 17 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578001 | 9e-84 | JX578001.1 Gossypium hirsutum clone NBRI_GE9934 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605540.1 | 0.0 | PREDICTED: transcription factor MYB24 | ||||
Refseq | XP_017605541.1 | 0.0 | PREDICTED: transcription factor MYB24 | ||||
Refseq | XP_017605542.1 | 0.0 | PREDICTED: transcription factor MYB24 | ||||
TrEMBL | A0A0B0NVV0 | 0.0 | A0A0B0NVV0_GOSAR; Transcription factor MYB86-like protein | ||||
STRING | Gorai.009G142200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 7e-80 | myb domain protein 26 |