PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05393_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 238aa MW: 26264 Da PI: 4.9633 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.9e-17 | 54 | 104 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+ ++ a+++++g Cotton_A_05393_BGI-A2_v1.0 54 PSYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARPHDVAALSIKG 104 57*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.49E-30 | 54 | 114 | No hit | No description |
Pfam | PF00847 | 2.2E-11 | 54 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.04E-20 | 55 | 113 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.8 | 55 | 112 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 55 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-34 | 55 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 56 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MTKPNHSSSS EAESWSSNNA NNSNSSSPTS SSSETVLSRK LNGKRGRDTS SKHPSYRGVR 60 MRSWGKWVSE IREPRKKSRI WLGTFPTPEM AARPHDVAAL SIKGASAILN FPDLTEFLPR 120 PVSLLPRDIR AAAVKAASMV NFNALSSSPS SSSLVSESSS LSESNASDEP EELSEIVQLP 180 NIEGNFDSLF DSQNEFILLD SVDGWVYPPQ DFYGGFYDQK WVTENLTAAS FETTFLWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 46 | 112 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP780188 | 0.0 | KP780188.1 Gossypium hirsutum C-repeat binding factor 5 (CBF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605416.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 3e-58 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2P5S6H7 | 1e-167 | A0A2P5S6H7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G136500.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-58 | ERF family protein |
Publications ? help Back to Top | |||
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