PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05393_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 238aa    MW: 26264 Da    PI: 4.9633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05393_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1754104155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+ ++ a+++++g
  Cotton_A_05393_BGI-A2_v1.0  54 PSYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARPHDVAALSIKG 104
                                 57*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-3054114No hitNo description
PfamPF008472.2E-1154104IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2055113IPR016177DNA-binding domain
PROSITE profilePS5103222.855112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3055113IPR001471AP2/ERF domain
SMARTSM003804.0E-3455118IPR001471AP2/ERF domain
PRINTSPR003671.6E-95667IPR001471AP2/ERF domain
PRINTSPR003671.6E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MTKPNHSSSS EAESWSSNNA NNSNSSSPTS SSSETVLSRK LNGKRGRDTS SKHPSYRGVR  60
MRSWGKWVSE IREPRKKSRI WLGTFPTPEM AARPHDVAAL SIKGASAILN FPDLTEFLPR  120
PVSLLPRDIR AAAVKAASMV NFNALSSSPS SSSLVSESSS LSESNASDEP EELSEIVQLP  180
NIEGNFDSLF DSQNEFILLD SVDGWVYPPQ DFYGGFYDQK WVTENLTAAS FETTFLWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2046112572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801880.0KP780188.1 Gossypium hirsutum C-repeat binding factor 5 (CBF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605416.11e-171PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A2P5S6H71e-167A0A2P5S6H7_GOSBA; Uncharacterized protein
STRINGGorai.009G136500.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]