PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05379_BGI-A2_v1.0
Common NameF383_05038
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 758aa    MW: 83721.7 Da    PI: 6.5129
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05379_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21103158156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Cotton_A_05379_BGI-A2_v1.0 103 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 158
                                 7999************************************************9877 PP
2START232.61e-722734962206
                                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWde 74 
                                 + ++a++el+k+a+a+ep+Wv+s+    e++n+de++++f+ + +      +s+ea+r++gvv+ +l++lv++++d + qW+e
  Cotton_A_05379_BGI-A2_v1.0 273 IVNQAMEELQKMATAGEPLWVRSVetgrEILNYDEYVKEFSVESSsngrpkRSIEASRETGVVFLDLPRLVQSFMDAN-QWKE 354
                                 56789***********************************77666899******************************.**** PP

                                 T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
                       START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146
                                 +++    ka+t++vi+ g      ga+qlm+aelq+l+plvp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+v+++
  Cotton_A_05379_BGI-A2_v1.0 355 MFPciisKAATVDVICHGeapnknGAVQLMFAELQMLTPLVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLVKCR 436
                                 ************************************************************************98.9******* PP

                                 ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 ++pSg++i+++ ngh+kv+wveh +++++++h l+r +v+sgla+ga++w+atlq+qce+
  Cotton_A_05379_BGI-A2_v1.0 437 KRPSGCIIQDTTNGHCKVIWVEHLECQKNTVHTLYRTIVRSGLAFGARHWMATLQHQCER 496
                                 **********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-2389154IPR009057Homeodomain-like
SuperFamilySSF466892.26E-2091161IPR009057Homeodomain-like
PROSITE profilePS5007118.091100160IPR001356Homeobox domain
SMARTSM003898.6E-19102164IPR001356Homeobox domain
PfamPF000461.0E-18103158IPR001356Homeobox domain
CDDcd000867.71E-17107158No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084839.918263499IPR002913START domain
SuperFamilySSF559612.06E-34265496No hitNo description
CDDcd088755.26E-114267495No hitNo description
Gene3DG3DSA:3.30.530.209.9E-6270494IPR023393START-like domain
SMARTSM002341.4E-73272496IPR002913START domain
PfamPF018529.8E-59273496IPR002913START domain
SuperFamilySSF559617.28E-14526745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGVVDMTNPP TKDFFASPAL SLSLAGIFRD AGATAAAATA SASMEVEEGD EGSGGGGGSG  60
SKKDDTVEIS SENSGPARSR SEDDLLDHDD DEDDADKSKK KKRKKYHRHT ADQIREMEAL  120
FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI QERHENSLLK QELEKLRDEN  180
KAMRETINKA CCLNCGMATT AKDGSITAEE QQLRIENAKL KAEVEKLRTV IGKYPPGAST  240
TGSCSSGNDQ ENRSSLDFYT GIFGLEKSRI MEIVNQAMEE LQKMATAGEP LWVRSVETGR  300
EILNYDEYVK EFSVESSSNG RPKRSIEASR ETGVVFLDLP RLVQSFMDAN QWKEMFPCII  360
SKAATVDVIC HGEAPNKNGA VQLMFAELQM LTPLVPTREV YFVRYCKQLS AEQWAIVDVS  420
IDKVEENIDA SLVKCRKRPS GCIIQDTTNG HCKVIWVEHL ECQKNTVHTL YRTIVRSGLA  480
FGARHWMATL QHQCERLVFF MATNVPTKDS TGVATLAGRK SILKLAQRMT WSFCHSIGAS  540
SYHTWNKVST KTGEDIRVSS RKNLNDPGEP HGVIVCAVSS VCLPVSPTLL FDFLRDESRR  600
SEWDIMSNGG PVQSIANLAK GKDRGNAVTI QAMKSKENSM WILQDSCTNA FESMVVFAHV  660
DVTGIQSVIT GCDSSNMAIL PSGFSILPDG LESRPLVISS RHEKSNDTEG GSLLTVAFQI  720
LTNSSPTAKL TMESVESVNT IVSCTLRNIK TSLQCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103KKKKRK
298104KKKKRKK
3100104KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3282660.0EU328266.1 Gossypium arboreum homeodomain protein HOX1 (HOX1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606636.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0B0PSH00.0A0A0B0PSH0_GOSAR; Homeobox-leucine zipper GLABRA 2-like protein
STRINGGorai.009G135100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]