PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05265_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 396aa    MW: 44083.8 Da    PI: 4.7059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05265_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.3e-19123172255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Cotton_A_05265_BGI-A2_v1.0 123 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEALRIRG 172
                                 69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-33123181No hitNo description
PROSITE profilePS5103224.553123180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32123182IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22123182IPR016177DNA-binding domain
SMARTSM003801.9E-37123186IPR001471AP2/ERF domain
PfamPF008472.2E-12124172IPR001471AP2/ERF domain
PRINTSPR003671.2E-11124135IPR001471AP2/ERF domain
PRINTSPR003671.2E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MCGGAIISDF IPPARLRRLT ADYLWPDLKK SGSKKRSGRK HSKKPAVGFE DDFEADFQVF  60
KDEDSDVDDF NDDVDDVLAD VKSFAFSATK KPSPAVSHGS NSIKSVEFSG QAEKSAKRKR  120
KNQYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDAEALRI RGKKAKVNFP  180
DETPRTTPKH AVKMNSQKPL SGSNLSSVQS SLNPDFSYSN KLEQGYYDTV GFIEEKSLMD  240
QFAYADPVRA AVDDGLKPFA EPENTASYFN SDQGSNNFDS SDLVWGEQGA KTPEISSSLE  300
PTLEVNEFLD NANLTKKLKL SLNNVMPTGG DNLVKSLSDE LLAMDNQVNY FQTPFIDENW  360
NVSMDDFLNG DATQDGGNEM GFWSFDDFPS IDGGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-22123180260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A5e-211221821374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8171340.0AY817134.1 Gossypium hirsutum putative ethylene responsive element binding protein mRNA, complete cds.
GenBankKP7802010.0KP780201.1 Gossypium hirsutum C-repeat binding factor 18 (CBF18) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615756.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2P5WJ710.0A0A2P5WJ71_GOSBA; Uncharacterized protein
STRINGGorai.010G236100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-69related to AP2 12