PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05224_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 166aa MW: 19143.9 Da PI: 8.0003

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05224_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.2	2.4e-37	14	109	2	96
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilkl 83 C+aCk++rr+C +dC++apyfp+ ++++f+n+hklFG++nv+kl+++l +++++++am+++v e+++ra+dPv G+++vi++l Cotton_A_05224_BGI-A2_v1.0 14 CSACKYQRRRCRADCPFAPYFPHGREQQFKNMHKLFGMNNVIKLIRTLkDPSTKDIAMRTIVVESDMRAKDPVGGCYRVIQEL 96 **********************************************55666************************** PP DUF260 84 qqqleqlkaelal 96 q+q+e+++ael++ Cotton_A_05224_BGI-A2_v1.0 97 QHQIECKQAELDK 109 ********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.706	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-36	14	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MSISTSGNTE TEDCSACKYQ RRRCRADCPF APYFPHGREQ QFKNMHKLFG MNNVIKLIRT 60 LKDPSTKDIA MRTIVVESDM RAKDPVGGCY RVIQELQHQI ECKQAELDKI YYNIANCRAQ 120 NAHHLQMQKI DDGDHCQMMN KSPLIQFETE KLANLSIKSD DNIGEK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-24	13	114	11	111	LOB family transfactor Ramosa2.1
5ly0_B	7e-24	13	114	11	111	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721392.1	1e-124	PREDICTED: LOB domain-containing protein 22-like
Refseq	XP_017613627.1	1e-124	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	6e-36	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1U8M3M3	1e-122	A0A1U8M3M3_GOSHI; LOB domain-containing protein 22-like
STRING	Gorai.010G232100.1	5e-99	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-38	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]