PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05223_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 170aa    MW: 19463.5 Da    PI: 8.2108
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05223_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.82.6e-3116113296
                      DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG..asnvlkllkal.peeeredamsslvyeAearardPvyGavgvil 81 
                                 C aCk++rr+C++ C +apyfp+ ++++++n+hklFG  + nv+kl+++l +++++++a+++++ ++++ra+dPv G++++i+
  Cotton_A_05223_BGI-A2_v1.0  16 CLACKYQRRRCPAYCLFAPYFPHGHEQQLKNMHKLFGsgMVNVIKLVRTLeDPSKKDIAIRTIMVQSDMRAKDPVGGCYRIIQ 98 
                                 9***********************************733789********5667799************************** PP

                      DUF260  82 klqqqleqlkaelal 96 
                                 +lq+q+e+++ael++
  Cotton_A_05223_BGI-A2_v1.0  99 ELQHQIECKQAELDQ 113
                                 ************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.95714118IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-3016113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MRISTSGNTA IVTEDCLACK YQRRRCPAYC LFAPYFPHGH EQQLKNMHKL FGSGMVNVIK  60
LVRTLEDPSK KDIAIRTIMV QSDMRAKDPV GGCYRIIQEL QHQIECKQAE LDQIYYTIAI  120
CRAQNAHRLQ MQKIDDGDHC QMMNKLPLIG FETEKLANLS IKSDDNTGEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-201511511108LOB family transfactor Ramosa2.1
5ly0_B2e-201511511108LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613626.11e-126PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A2P5W8591e-123A0A2P5W859_GOSBA; Uncharacterized protein
STRINGGorai.010G232100.11e-119(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2210235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-34LOB domain-containing protein 22