PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05148_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 315aa    MW: 35836 Da    PI: 7.7109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05148_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171462148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl
  Cotton_A_05148_BGI-A2_v1.0 14 KGPWSPEEDSKLKDYIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                                79*********************************************97 PP
2Myb_DNA-binding39.21.6e-1269111246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g +++eEd  + ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_05148_BGI-A2_v1.0  69 GEFSEEEDMVICNLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                 78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.175962IPR017930Myb domain
SuperFamilySSF466891.52E-2711109IPR009057Homeodomain-like
SMARTSM007176.2E-131364IPR001005SANT/Myb domain
PfamPF002491.9E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-241569IPR009057Homeodomain-like
CDDcd001671.19E-91662No hitNo description
PROSITE profilePS5129421.02163117IPR017930Myb domain
SMARTSM007178.2E-1267115IPR001005SANT/Myb domain
PfamPF002493.0E-1169111IPR001005SANT/Myb domain
CDDcd001673.51E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDSKLKDYIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDMVIC NLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAL  120
SSQPQRKPPP LPIPSSHQTI PPSYKDCSSY YYTPSSRSFA GFEPSSTVQS DLLNHNNTFL  180
ATDSSLNHNT PDSFVSYYPV KEKFLMFASE PSCSSSDGSS YGKEIKQEDM SNFQGFCAPN  240
GYEDNHKFML SYGNRNQWTE KPSGYHGETP LDYDLEDVKR LMDSSSSNNS CNNNNNNHLL  300
IDESKSQEKV MYYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527230.0KM052723.1 Gossypium hirsutum RAX-like transcription factor RAX4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625656.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2P5X4850.0A0A2P5X485_GOSBA; Uncharacterized protein
STRINGGorai.004G231100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.13e-76myb domain protein 68