PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05129_BGI-A2_v1.0
Common NameF383_35000
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91570.6 Da    PI: 6.2761
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05129_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-182583357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  Cotton_A_05129_BGI-A2_v1.0 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCRDKQ 83
                                5679****************************************************996 PP
2START161.27.9e-511643722205
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +ae +++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++++ ve+l d++  W ++++  e+   
  Cotton_A_05129_BGI-A2_v1.0 164 IAEGTLKEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIVEILKDRP-SWFRDCRNLEVFTM 245
                                 678899****************************************************9999999999.*******8888888 PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                  + g  g+++l+++++ a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+++++g+
  Cotton_A_05129_BGI-A2_v1.0 246 FRAGngGTIELIYTQMFAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRSCEGGG 328
                                 887777********************************************99999998999********************** PP

                                 EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                       START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                 s v++v+h +l++++++++lr+l++s+ + ++k++ a+l++ ++
  Cotton_A_05129_BGI-A2_v1.0 329 SIVHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYVRQ 372
                                 ***************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2082084IPR001356Homeobox domain
SMARTSM003895.4E-152288IPR001356Homeobox domain
SuperFamilySSF466891.11E-152486IPR009057Homeodomain-like
CDDcd000868.20E-162584No hitNo description
PfamPF000461.4E-152683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182780IPR009057Homeodomain-like
CDDcd146861.11E-577116No hitNo description
Gene3DG3DSA:1.20.5.1701.5E-481130No hitNo description
PROSITE profilePS5084826.074154382IPR002913START domain
CDDcd088752.40E-71158374No hitNo description
SMARTSM002348.0E-41163373IPR002913START domain
SuperFamilySSF559613.43E-32164375No hitNo description
Gene3DG3DSA:3.30.530.205.6E-18164365IPR023393START-like domain
PfamPF018525.7E-48164372IPR002913START domain
PfamPF086701.7E-40702834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAMAVAQHRE SSSGSNINKH LDNGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR DKQKTEASRL QTVNRKLNAM NKLLMEENDR LQKQVSQLVN  120
ENGYMKQQLH TVNASTNDAS CDSVVTTPSH SLKDANNPAG LLSIAEGTLK EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIVEILKDR PSWFRDCRNL  240
EVFTMFRAGN GGTIELIYTQ MFAPTTLAPA RDFWTLRYTT TLENGSLVVC ERSLSGSGAG  300
PNAAAAAQFV RAEMLPSGYL IRSCEGGGSI VHIVDHLNLE AWSVPEVLRP LYESSKVVAQ  360
KMTIAALRYV RQIAQETSGE VVYGPGRQPA VLRTFSQRLS RGFNDAINGF NDDGWSIMNC  420
DGAEDVIIAI NSNKSLNSTP NPVNALPLLG GVLCAKASML IQNVSPAVLI RFLREHRSEW  480
ADFNVDAYSA ASLKAGSYAY PGMRPTRFTG SQIIMQLGHT IEHEELLEVV RLEGHSFAED  540
NAFLSRDIHL LQLCSGIDEN AVGGCSELLF APINEMFPDD APLLPSGFRV IPLDTKSSDT  600
QDSLATNRTL DLTSSLEPGP ATNHIAVDAP SCPNIRSVLT IAFQFPFDSN LEDNVANMAH  660
QYVRSIISSV QRIAIAISPS GLIPAVGPKQ SPSSPEALTL AHWICRKLLR PEPPVGDSLL  720
KNLWQHQDAV LCCSLKSLPV MIFANQAGLD MLETTLMALQ DITLDKIFDE TGRKTLCSDF  780
AKLMQEGLAY LPAGICMSTM GRHVSYEQAV AWKVLEADES TVHCLAFSFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623828.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A0B0N8H20.0A0A0B0N8H2_GOSAR; Homeobox-leucine zipper REVOLUTA-like protein
STRINGGorai.004G229400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]