PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05099_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 26119.4 Da PI: 5.8512 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.9 | 9.8e-37 | 4 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 +GfrFhPtdeel+ eyL+ k+ +++ + +vi+e+ di+++ePw+Lp + ++++++ wyf + + ky+++k +r+t +g Cotton_A_05099_BGI-A2_v1.0 4 VKGFRFHPTDEELI-EYLQIKTFNRDSLV-QVIAEIpDICESEPWELPgRsVLQTGDRLWYFMYPPKYKYRNSKLVSRTTLEG 84 68************.9******9999666.89****************6347788999************************* PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 yWk tgk ++++++ +g ++g kktL fykg +++ ++t Wvmhey+l Cotton_A_05099_BGI-A2_v1.0 85 YWKITGKARKIINSeTGMEIGNKKTLLFYKGqcNDKIKNNTCWVMHEYEL 134 **********999867888**********9833444456899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-35 | 2 | 135 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.269 | 3 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-20 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MNMVKGFRFH PTDEELIEYL QIKTFNRDSL VQVIAEIPDI CESEPWELPG RSVLQTGDRL 60 WYFMYPPKYK YRNSKLVSRT TLEGYWKITG KARKIINSET GMEIGNKKTL LFYKGQCNDK 120 IKNNTCWVMH EYELKAMLDS TNSHQDILDP NGSSEPEASN NHNDVHNHCS SVDTYGDERS 180 NQHNTVDEGE GSNISTNFVN HVAEDAIPEV RCGNRLSMWM MLKMTI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-26 | 1 | 134 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016727770.1 | 1e-156 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X3 | ||||
Refseq | XP_017625185.1 | 1e-156 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X3 | ||||
TrEMBL | A0A1U8MLS9 | 1e-155 | A0A1U8MLS9_GOSHI; protein CUP-SHAPED COTYLEDON 3-like isoform X3 | ||||
STRING | Gorai.004G227000.1 | 1e-141 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24377 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 8e-36 | TCV-interacting protein |