PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_05039_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 350aa MW: 38540.1 Da PI: 7.2027 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 160 | 209 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Cotton_A_05039_BGI-A2_v1.0 160 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 209 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-33 | 159 | 219 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 160 | 218 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 160 | 223 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.169 | 160 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-23 | 160 | 218 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.3E-11 | 161 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-14 | 161 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 183 | 199 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MAAAMDFISS GVDQSDLYGG ELMEALEPFM KSVSSSSPFP SPSPSPSSLP STSYLSFSSS 60 ETQPNFYPNS CCYPYPTPMD SVSCPQQPQT GSTIGLNSLT QAQIHQIQLQ FHLHNNQPSY 120 LCQSSQPNTI SANSNPMVSF LCPKPVPMKH VGAPSKPTKL YRGVRQRHWG KWVAEIRLPR 180 NRTRLWLGTF DTAEEAALAY DKAAYKLRGD FARLNFPNLR HHGSHVGDYK PLPSSVDAKL 240 QAICESLVQN PKQGSKKKSS KVTADTKTRN NKKSDMAEPK PEENTAKVEN SSSLSTVQSE 300 SEGSAVSSPL SDLTFSDFDE QPWPEVVSSS ETFMLSKYPS EIDWDSILKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-22 | 159 | 217 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY619718 | 0.0 | AY619718.1 Gossypium hirsutum transcription factor DRE-binding factor 2 (DBP2) mRNA, complete cds. | |||
GenBank | DQ093964 | 0.0 | DQ093964.1 Gossypium hirsutum dehydration responsive element-binding protein 2 (DBP2) gene, complete cds. | |||
GenBank | KP780198 | 0.0 | KP780198.1 Gossypium hirsutum C-repeat binding factor 15 (CBF15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017626568.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 7e-92 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | Q6IVL3 | 0.0 | Q6IVL3_GOSHI; C-repeat binding factor 15 | ||||
STRING | Gorai.009G238800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2716 | 26 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-68 | related to AP2 4 |
Publications ? help Back to Top | |||
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