PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04939_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 23377.4 Da PI: 4.7025 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 85.9 | 8e-27 | 16 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 ppG+rF+Ptd el+++yL kkv+g++l+ ++i+e++iy ePw+ ++++++ y F+k +k + +gk+ r++ g Cotton_A_04939_BGI-A2_v1.0 16 PPGYRFEPTDIELLQDYLWKKVNGDPLPY-NIISECEIYGNqdkEPWNVF--IETSTETFYVFTKLKK-KGKGKNIDRVAGCG 94 9****************************.89*****99644449****6..5565566677777655.578*********** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wk + + +++ ++ ++g +k +v+ + +++g+k +W+mhe++l Cotton_A_04939_BGI-A2_v1.0 95 TWKGQKT-DPIMY-EKMKIGNRKLFVYEVKGSNEGVKGHWIMHEFSL 139 ***8865.67887.7899**********9999*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-32 | 6 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.949 | 15 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-17 | 16 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEFDSYEYQF LMTGIPPGYR FEPTDIELLQ DYLWKKVNGD PLPYNIISEC EIYGNQDKEP 60 WNVFIETSTE TFYVFTKLKK KGKGKNIDRV AGCGTWKGQK TDPIMYEKMK IGNRKLFVYE 120 VKGSNEGVKG HWIMHEFSLV DEEDKQIGDY VVCSIRNKNA KDDTDDEEPP MKKTRFNLED 180 HNPPETTSSA CPLQTLLSDW S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-20 | 15 | 160 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-20 | 15 | 160 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-20 | 15 | 160 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-20 | 15 | 160 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-20 | 15 | 160 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-20 | 15 | 160 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-20 | 15 | 160 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639771.1 | 1e-149 | PREDICTED: NAC domain-containing protein 41-like | ||||
TrEMBL | A0A1U8PNM9 | 1e-146 | A0A1U8PNM9_GOSHI; NAC domain-containing protein 41-like | ||||
STRING | Gorai.010G251100.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13343 | 7 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 8e-22 | NAC domain containing protein 47 |