PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04879_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 317aa MW: 35302.9 Da PI: 5.3088 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 50 | 98 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+ +++g Cotton_A_04879_BGI-A2_v1.0 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAAISIKG 98 56******.**********965...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-28 | 49 | 105 | No hit | No description |
PROSITE profile | PS51032 | 20.402 | 49 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-32 | 49 | 112 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-20 | 50 | 107 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-27 | 50 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 50 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-10 | 52 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 72 | 88 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010102 | Biological Process | lateral root morphogenesis | ||||
GO:0010432 | Biological Process | bract development | ||||
GO:0010451 | Biological Process | floral meristem growth | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MSTSKTMENH FKYEPVVQTQ AGFTLLQRNL SPPQPGERRG RRKQAEPGRF LGVRRRPWGR 60 YAAEIRDPTT KERHWLGTFD TAQEAALAYD RAAISIKGAQ ARTNFVYSDN SCFHVLSPFD 120 QFLTSFQTQQ PKQAINHGVN SEPVPHQPDI SHSENTIPTP IIKPNNNDPS SSSLSSSSSS 180 YGSSVDDSAF FFSTDTNSGY LASIVPRNCL NPPSSNPTSS HVSNQNQSHS GNNNYVLPID 240 VTNTEFPCFV EGMDQESLWS SFDQQSWELS DIVNPPLMDE DGCMKAFHPY NDNPMMIPQA 300 SSMAPFGDIV DFGYSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 40 | 105 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00520 | DAP | Transfer from AT5G18560 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ524437 | 0.0 | HQ524437.1 Gossypium herbaceum clone NBRI_G002 simple sequence repeat marker, genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017639995.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
TrEMBL | A0A1U8MNW0 | 0.0 | A0A1U8MNW0_GOSHI; ethylene-responsive transcription factor ERF086-like | ||||
STRING | Gorai.005G058700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5487 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 6e-57 | ERF family protein |