PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04802_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 537aa    MW: 58868 Da    PI: 6.8954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04802_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-153279148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed  l+d+v+ +G g+W+++ +  g+ R++k+c++rw ++l
  Cotton_A_04802_BGI-A2_v1.0 32 KGPWTAAEDAVLADYVRTHGEGNWNAVQKNTGLARCGKSCRLRWANHL 79
                                79******************************************9986 PP
2Myb_DNA-binding49.21.2e-1585128146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +g++++eE+ ++v++++++G++ W++ a  ++ gRt++++k++w++
  Cotton_A_04802_BGI-A2_v1.0  85 KGAFSPEEERIIVELHAKMGNK-WARMATQLP-GRTDNEIKNYWNT 128
                                 799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1582779IPR017930Myb domain
SuperFamilySSF466891.17E-2831126IPR009057Homeodomain-like
SMARTSM007177.3E-123181IPR001005SANT/Myb domain
PfamPF002496.3E-143279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-233386IPR009057Homeodomain-like
CDDcd001678.65E-103479No hitNo description
PROSITE profilePS5129425.56780134IPR017930Myb domain
SMARTSM007178.2E-1684132IPR001005SANT/Myb domain
PfamPF002491.9E-1485128IPR001005SANT/Myb domain
CDDcd001673.16E-1187128No hitNo description
Gene3DG3DSA:1.10.10.605.6E-2587133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMMMGGNNQI TTQNEGGGSN NGGGEGGIML KKGPWTAAED AVLADYVRTH GEGNWNAVQK  60
NTGLARCGKS CRLRWANHLR PNLKKGAFSP EEERIIVELH AKMGNKWARM ATQLPGRTDN  120
EIKNYWNTRV KRRQRQGLPL YPPEIQPLYS QHQRNQHRSL PSTPLASPTA TSTSSFSFQT  180
PPNPSSSTTL HGSILTPAHP LHIPRSASSH VLYNPQTPPP LHSASAVSTP CPSPLPSSSP  240
STPTPVSPLQ SPHKPAFSTL PLFDSSTSNT CNNNINANNA INNNTFPSDF FFPRATPPLQ  300
TPMRYKRFRP DVSESINNER HNNSISVNGG CNSTSSSFMS QYPPFQKTSF FNSHATLNVT  360
TSTPLTSPHY SPSYTLDPVT LDLASSSRIL ADHQNFDNGQ FISTPGFDYT PKTDELPSNQ  420
FVSLDGTSEV TFDTKGNCNY ISNDQNNHHQ DLSIHFGGGG LLDDMLEEAQ LLAGDNDILR  480
RESCLDGFNT SSDGLTSGKE ETVTDQEINA TQEEYSRLLN AIPSSMPMPD WYNNCGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30301335107B-MYB
1mse_C2e-30291331104C-Myb DNA-Binding Domain
1msf_C2e-30291331104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5787031e-92JX578703.1 Gossypium hirsutum clone NBRI_GE10781 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640015.10.0PREDICTED: transcription factor MYB86
SwissprotQ9S7732e-77MYB97_ARATH; Transcription factor MYB97
TrEMBLA0A2P5XYP50.0A0A2P5XYP5_GOSBA; Uncharacterized protein
STRINGGorai.002G089900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-70myb domain protein 101
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]