PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04656_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 356aa MW: 40183.1 Da PI: 6.5046 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 262 | 318 | 2 | 55 |
T--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55 rkR ++ ke + L + + k +yps++++ LA+++gL+++q+ +WF N+R ++ Cotton_A_04656_BGI-A2_v1.0 262 RKRGKLPKEARQKLLDWWAkhyKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 318 5555556666666655555222579*****************************885 PP | |||||||
2 | ELK | 41.1 | 3.6e-14 | 238 | 259 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Cotton_A_04656_BGI-A2_v1.0 238 ELKGQLLRKYSGYLGSLKQEFM 259 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-19 | 99 | 143 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.7E-21 | 101 | 139 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.4E-19 | 148 | 199 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.5E-17 | 151 | 198 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.174 | 238 | 258 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.9E-11 | 238 | 259 | IPR005539 | ELK domain |
SMART | SM01188 | 2.8E-8 | 238 | 259 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.41 | 258 | 321 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-20 | 260 | 331 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-14 | 260 | 325 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.98E-16 | 261 | 322 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-28 | 263 | 323 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.2E-17 | 278 | 317 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 296 | 319 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEGVSNSTSC MMAFGHNSNG LCPMTVMPLT AFHPHDQHQY HHHHNSDFNS LFLPLAPTNN 60 QDQNHNSSSG SSMIIDDQSN TTNNNTGCYF MESNDGSSSS VKAKIMAHPH YHRLVAAYVN 120 CQKVGAPPEV VARLEQVCAS AATMGPSTTG CIGEDPALDQ FMEAYSEMLA KYEQELSKTF 180 KDAMLFLQSV EYQFKALTVS PSNSGDTCGD AVNLNGSSEE EADMNNHHFI DPLAEDRELK 240 GQLLRKYSGY LGSLKQEFMK KRKRGKLPKE ARQKLLDWWA KHYKWPYPSE SQKLALAEST 300 GLDQKQINNW FINQRKRHWK PSEDMQFVVM EATYPHYFMD NILGNPFPMD LSHALL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 253 | 262 | LKQEFMKKRK |
2 | 259 | 266 | KKRKRGKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444605.1 | 0.0 | PREDICTED: homeobox protein SBH1-like | ||||
Swissprot | P46608 | 1e-145 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A0D2TLX0 | 0.0 | A0A0D2TLX0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G181500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6473 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-134 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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