PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04612_BGI-A2_v1.0 | ||||||||
Common Name | F383_18115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 395aa MW: 43930.6 Da PI: 6.5095 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.5 | 5.5e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelv++yL+ kv + ++ i+evd++++ePw+Lp +k +e+ewyfFs rd+ky++g r+nrat +gyW Cotton_A_04612_BGI-A2_v1.0 21 LPPGFRFHPTDEELVTFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPSGLRTNRATGAGYW 102 79*************************877.45***************8888899**************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl Cotton_A_04612_BGI-A2_v1.0 103 KATGKDREVYSAsTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 **********9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-63 | 15 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.891 | 21 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-28 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MLAVEEILSE LAEEEVNGHG LPPGFRFHPT DEELVTFYLA SKVFNGSFCG VEIAEVDLNR 60 CEPWELPDVA KMGEREWYFF SLRDRKYPSG LRTNRATGAG YWKATGKDRE VYSASTGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSCRPSCKE EWVICRIFHK TIEKKNALAQ 180 GQSYVLAVSS SSTTFLPPLL ETPTPLLKSE SQTLMQAHNS FLIHRHENDL KSLINPVVSQ 240 SQSQLFPSNG LQPSYSPTST FATTDKNAVT NTTTTTSSAA MLFKSLFSHQ DCLFKEQAAF 300 PKQCKAEADF SYLNLPAANT LNWMDRIHPS PPCQNPLFFD MDYSVLGFAE GVRGTARGDT 360 NAHDMSTSIS INRASGQMIL NPPTTTASGE SGPLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 21 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 21 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3ulx_A | 3e-51 | 12 | 173 | 9 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-51 | 21 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 21 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847205 | 0.0 | KC847205.1 Gossypium hirsutum NAC domain protein NAC28 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017604007.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q9S851 | 1e-106 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A0B0MN74 | 0.0 | A0A0B0MN74_GOSAR; Cup-shaped cotyledon 3-like protein | ||||
STRING | Gorai.009G186000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 3e-96 | NAC family protein |
Publications ? help Back to Top | |||
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