PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04599_BGI-A2_v1.0

Common Name

F383_17201

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 982aa MW: 109224 Da PI: 7.0581

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04599_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.5e-28	603	654	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yFs ++kdAAk+Lgvc+T+LKr+CRq+GIkRWP+Rk++++ Cotton_A_04599_BGI-A2_v1.0 603 AEKTITLQVLRQYFSESLKDAAKSLGVCPTTLKRTCRQHGIKRWPSRKLHKV 654 589**********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.7	593	674	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-24	606	654	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.8E-19	829	899	No hit	No description
PROSITE profile	PS51745	23.091	831	907	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.1E-18	831	899	No hit	No description
SMART	SM00666	4.9E-20	831	919	IPR000270	PB1 domain
Pfam	PF00564	8.9E-15	832	899	IPR000270	PB1 domain
CDD	cd06407	3.84E-36	833	911	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 982 aa Download sequence Send to blast
MEDSILSPVM QLDYMDELLL DGCWLEASPT EGSDFLDPNA FFDPTFEWPI LDSNGGDLGG 60 SLFQGENQIS FLPGNPHMNE NHSQGAHLSP NLDDVDGMSR NLHGDCMTNT SELSRRWWIG 120 PRTNPGPSTS VMLRLIGALN HIKDSAKETD VLVQLWLPVN KGGRRILTTS EQPFSLDPNS 180 QRLASYRNIS VKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH 240 GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTGNI 300 QACNSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTEN YFHCVSTVDD 360 ACYIAEPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKMF 420 KLHAAVAIRF RCIHTGKADF VLEFFLPADC RDPEGKKEML NSLSIILQQV CCSLRVVTNE 480 ELEEDRDMAV SEVIASLDGI PSRKELSEDQ CTYHSEKYSR ESSSWTVSLT EVNQSSSTST 540 STAMKLRKGK PRATWDEKLS KVKQHKKQIS LRGSVEGGDS TINEISFSSA TKRKTGQKRR 600 SKAEKTITLQ VLRQYFSESL KDAAKSLGVC PTTLKRTCRQ HGIKRWPSRK LHKVGNSLEK 660 LQHVIDSVQG VSGAFHISSL YPKFPELASP RPSGKSTSSA SVLGLNDKPK QKPILPEGGN 720 FVSQAATSNS PSSSCSQSSS SSHSCSSGTH QPSKFNISGN GGVIIGENSG NGELKRVTND 780 TELHTLSQEG LKLFPRSQSP ASVKEQLISD SIQPVITENN SQIAQDLDAQ TQKVKVTYGD 840 EKIRFRMQSK WRLKDLLLEI TRRFNIDDIS GFDLKYLDDD SEWVLLTCDA DLEECIDVAL 900 VLLDLKYLVN DLDLVLIEKN NVFEIKNLIA GCSAEGNARF RLSSRGTCRR STIKEILVTG 960 FGLMTMFCMA EAGFKFKSFI QP

Sequence ? help Back to Top

Protein Sequence Length: 982 aa Download sequence Send to blast

MEDSILSPVM QLDYMDELLL DGCWLEASPT EGSDFLDPNA FFDPTFEWPI LDSNGGDLGG  60
SLFQGENQIS FLPGNPHMNE NHSQGAHLSP NLDDVDGMSR NLHGDCMTNT SELSRRWWIG  120
PRTNPGPSTS VMLRLIGALN HIKDSAKETD VLVQLWLPVN KGGRRILTTS EQPFSLDPNS  180
QRLASYRNIS VKYQFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFRSDE YHRVDHAQQH  240
GVRGTFALPV FEQGNRTCLG VIEVVMTTEK IKIKPEMESV CKALEAVNLR SFTASSTGNI  300
QACNSSYQAA LPEIKEVLKR ACETHRLPLA QTWVPCMQLG KEGCPHSTEN YFHCVSTVDD  360
ACYIAEPNIR GFHEVCSEHH LLKGQGVAGR AFMTNQPCFS TDITSFKKTE YPLAHHAKMF  420
KLHAAVAIRF RCIHTGKADF VLEFFLPADC RDPEGKKEML NSLSIILQQV CCSLRVVTNE  480
ELEEDRDMAV SEVIASLDGI PSRKELSEDQ CTYHSEKYSR ESSSWTVSLT EVNQSSSTST  540
STAMKLRKGK PRATWDEKLS KVKQHKKQIS LRGSVEGGDS TINEISFSSA TKRKTGQKRR  600
SKAEKTITLQ VLRQYFSESL KDAAKSLGVC PTTLKRTCRQ HGIKRWPSRK LHKVGNSLEK  660
LQHVIDSVQG VSGAFHISSL YPKFPELASP RPSGKSTSSA SVLGLNDKPK QKPILPEGGN  720
FVSQAATSNS PSSSCSQSSS SSHSCSSGTH QPSKFNISGN GGVIIGENSG NGELKRVTND  780
TELHTLSQEG LKLFPRSQSP ASVKEQLISD SIQPVITENN SQIAQDLDAQ TQKVKVTYGD  840
EKIRFRMQSK WRLKDLLLEI TRRFNIDDIS GFDLKYLDDD SEWVLLTCDA DLEECIDVAL  900
VLLDLKYLVN DLDLVLIEKN NVFEIKNLIA GCSAEGNARF RLSSRGTCRR STIKEILVTG  960
FGLMTMFCMA EAGFKFKSFI QP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017650020.1	0.0	PREDICTED: protein NLP4-like
Refseq	XP_017650021.1	0.0	PREDICTED: protein NLP4-like
TrEMBL	A0A0B0NIE2	0.0	A0A0B0NIE2_GOSAR; Protein NLP4-like protein
STRING	Gorai.009G187500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein