PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04572_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 147aa    MW: 16072 Da    PI: 6.5225
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04572_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.7e-161261255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                +ykGVr+++ +g+Wv+eIr+p     +  r +lg++ t+e Aa a++ a  +l+ 
  Cotton_A_04572_BGI-A2_v1.0 12 KYKGVRRRR-WGKWVSEIRVPG----TeGRLWLGSYSTPEAAAVAHDIAFYCLRR 61
                                8*****777.**********83....359********************999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-241172IPR001471AP2/ERF domain
CDDcd000184.78E-251271No hitNo description
SuperFamilySSF541711.96E-161271IPR016177DNA-binding domain
PfamPF008474.5E-81260IPR001471AP2/ERF domain
PROSITE profilePS5103221.2851271IPR001471AP2/ERF domain
SMARTSM003802.2E-261277IPR001471AP2/ERF domain
PRINTSPR003672.5E-81324IPR001471AP2/ERF domain
PRINTSPR003672.5E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MNADGSSADQ RKYKGVRRRR WGKWVSEIRV PGTEGRLWLG SYSTPEAAAV AHDIAFYCLR  60
RPSSLTALNF PSMLPPHVNS NMSPKSVQKA ASDAGMAVDA QMIMVDSPMN DEIKANTNDG  120
SSCGGGSWER SEGRETETLS ISIEDYL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5792533e-69JX579253.1 Gossypium hirsutum clone NBRI_GE11456 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636890.11e-106PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I84e-49ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1U8PP141e-103A0A1U8PP14_GOSHI; ethylene-responsive transcription factor ERF020-like
STRINGGorai.009G266200.11e-103(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]