PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04560_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 287aa MW: 33246.9 Da PI: 9.1548 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Cotton_A_04560_BGI-A2_v1.0 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 106.4 | 3.3e-35 | 76 | 173 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 +s+++ ++e +a+++qqe+akL+++i++Lq+++Rhl+G++L+sL++keL+q+e++Le+++++iRskK+e+ll++ie lqk+e Cotton_A_04560_BGI-A2_v1.0 76 TSNTNTVTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDSLSSLTVKELKQVENRLERGITRIRSKKHEMLLAEIEFLQKREI 158 5566669**************************************************************************** PP K-box 86 elqeenkaLrkklee 100 el++e +Lr+k++e Cotton_A_04560_BGI-A2_v1.0 159 ELENESVCLRTKIAE 173 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 34.118 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.30E-43 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 9.2E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.4E-25 | 86 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.244 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 NIRSTIDRYK KACSDTSNTN TVTEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDSLSSLT 120 VKELKQVENR LERGITRIRS KKHEMLLAEI EFLQKREIEL ENESVCLRTK IAEIERLQQA 180 NMVTGPELNA IQALASRNFF SPNVIEHPSA YSHPSDKKIL HLGVDINVYR EVKYQSLTMK 240 TCQHTLMTQI STSNWHLHDL AREHQCVSQS EISALREEDM RTQLTTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 1e-20 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 82 | 1 | 83 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC200249 | 0.0 | KC200249.1 Gossypium hirsutum MADS protein (MADS14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314025.1 | 1e-164 | agamous-like MADS-box protein AGL11 | ||||
Refseq | XP_012447415.1 | 1e-164 | PREDICTED: agamous-like MADS-box protein AGL11 | ||||
Refseq | XP_012447416.1 | 1e-164 | PREDICTED: agamous-like MADS-box protein AGL11 | ||||
Refseq | XP_017634765.1 | 1e-164 | PREDICTED: agamous-like MADS-box protein AGL11 | ||||
Refseq | XP_017634766.1 | 1e-164 | PREDICTED: agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 1e-137 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A2P5W0N5 | 1e-180 | A0A2P5W0N5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G265100.1 | 1e-163 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4994 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-124 | MIKC_MADS family protein |