PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04509_BGI-A2_v1.0
Common NameF383_20980
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 626aa    MW: 70866.1 Da    PI: 4.6267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04509_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1661.3e-51211472128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 ppGfrFhPtdeelv +yLk+k+ ++kl+l ++i+e+d+yk++P++Lp +  +k+++++w+fFs+rd+ky++  r+nrat +gy
  Cotton_A_04509_BGI-A2_v1.0  21 PPGFRFHPTDEELVLYYLKRKICRRKLKL-DIIRETDVYKWDPEELPaQsILKSGDRQWFFFSPRDRKYPNAARSNRATGHGY 102
                                 8****************************.99**************96346778999************************** PP

                         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wkatgkd++v++ ++++vg+kktLvfy+grap ge+tdWvmhey+l
  Cotton_A_04509_BGI-A2_v1.0 103 WKATGKDRTVTC-NSRTVGVKKTLVFYRGRAPIGERTDWVMHEYTL 147
                                 ************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-5916170IPR003441NAC domain
PROSITE profilePS5100554.59720170IPR003441NAC domain
PfamPF023651.6E-2721147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MTVAAKAATT DSCFGEDQVW PPGFRFHPTD EELVLYYLKR KICRRKLKLD IIRETDVYKW  60
DPEELPAQSI LKSGDRQWFF FSPRDRKYPN AARSNRATGH GYWKATGKDR TVTCNSRTVG  120
VKKTLVFYRG RAPIGERTDW VMHEYTLDEE ELKRCQNVKD YYALYKLYKK SGPGPKNGEQ  180
YGAPFKEEEW ADEEYASKAV DVITPVKQPN EAIPDDIVKA KNQIQSPLND IEEFMRQFTA  240
EPALPQAQAH FDNILPRLAG EEEIQSTLLD TSPRDVLLPK PLEVVHDHAS FELSQSPTSR  300
LQLQEAPEVT SVSDQFEQIP QICEEDFLEI DDLTSNVEKP VENGLQFNDW DGLCEFDLYC  360
DAAMFLQDIG PIEQGIVPFS YTENMINQVS YPLEPQLQHQ SNTNHMDQEL QFQLNATGVD  420
KQLQLQPNAF GNNQQVQSQL NTISDNQPQL NAFEDGILNQ VDYQLPFQSF GNEMERQLQA  480
DQINGSIWTN DQSGDVFTPS GSNLGNASSS SGLVYNGNNQ DEGDKKGEGA SRFSTALWSF  540
VDSIPTTPAS ASESPLVNRA FERMSSFSRL RMNVRNTNAL TVNGVTTARR RSRNKGFFLF  600
SILGALCAIL WFLIGMVRVV RSSISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-492114716140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637798.10.0PREDICTED: NAC domain-containing protein 17-like isoform X2
TrEMBLA0A0B0NSW30.0A0A0B0NSW3_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.009G260000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-125NAC domain containing protein 17