PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04485_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 270aa    MW: 29939.4 Da    PI: 4.6987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04485_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-172978255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                ++ GVr+++ +gr++AeIrdps+   + r++lg+f+tae+Aa a+++a ++++g
  Cotton_A_04485_BGI-A2_v1.0 29 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRASRSMRG 78
                                678******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-292885No hitNo description
PROSITE profilePS5103220.2052986IPR001471AP2/ERF domain
SMARTSM003805.0E-332992IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-203087IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-283086IPR001471AP2/ERF domain
PfamPF008471.7E-103078IPR001471AP2/ERF domain
PRINTSPR003676.2E-83041IPR001471AP2/ERF domain
PRINTSPR003676.2E-85268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDFSNSKSSS SKSKRKQQTQ HQQQQQETRF LGVRRRPWGR YAAEIRDPST KERHWLGTFD  60
TAEDAALAYD RASRSMRGSK ARTNFVYSDM PAGSSVTSII SPDEFQHDIS SIFSINPPFH  120
HQNEANHNQI FFNQDPFNAC QFSSGLPAQE SDAVQSYRPI TGLMEAGNGG SPQFRDNSSE  180
LPPLPPDVSS TCYGYGSGVD GSDMGYGAWN DTGLFGFSDQ NSNGFDSYVG FNSYELEQDS  240
PFLENMPLPS LPNSVGNAFD LGSSSTYFFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-203085359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00163DAPTransfer from AT1G28160Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5783121e-111JX578312.1 Gossypium hirsutum clone NBRI_GE10307 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730394.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
SwissprotQ9FZ902e-49ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A1U8MXT51e-179A0A1U8MXT5_GOSHI; ethylene-responsive transcription factor LEP-like
STRINGGorai.008G155600.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]