PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04485_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 29939.4 Da PI: 4.6987 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +gr++AeIrdps+ + r++lg+f+tae+Aa a+++a ++++g Cotton_A_04485_BGI-A2_v1.0 29 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEDAALAYDRASRSMRG 78 678******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.47E-29 | 28 | 85 | No hit | No description |
PROSITE profile | PS51032 | 20.205 | 29 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.0E-33 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-20 | 30 | 87 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-28 | 30 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-10 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MDFSNSKSSS SKSKRKQQTQ HQQQQQETRF LGVRRRPWGR YAAEIRDPST KERHWLGTFD 60 TAEDAALAYD RASRSMRGSK ARTNFVYSDM PAGSSVTSII SPDEFQHDIS SIFSINPPFH 120 HQNEANHNQI FFNQDPFNAC QFSSGLPAQE SDAVQSYRPI TGLMEAGNGG SPQFRDNSSE 180 LPPLPPDVSS TCYGYGSGVD GSDMGYGAWN DTGLFGFSDQ NSNGFDSYVG FNSYELEQDS 240 PFLENMPLPS LPNSVGNAFD LGSSSTYFFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 30 | 85 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00163 | DAP | Transfer from AT1G28160 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX578312 | 1e-111 | JX578312.1 Gossypium hirsutum clone NBRI_GE10307 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016730394.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q9FZ90 | 2e-49 | ERF87_ARATH; Ethylene-responsive transcription factor ERF087 | ||||
TrEMBL | A0A1U8MXT5 | 1e-179 | A0A1U8MXT5_GOSHI; ethylene-responsive transcription factor LEP-like | ||||
STRING | Gorai.008G155600.1 | 1e-175 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 2e-50 | ERF family protein |
Publications ? help Back to Top | |||
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