PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04481_BGI-A2_v1.0

Common Name

F383_22180

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 288aa MW: 32744 Da PI: 9.3011

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04481_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.6	3.6e-34	59	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrkn 75 lp+G++F+Ptd+el+ e+L+ kv+++ ++++ i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+ Cotton_A_04481_BGI-A2_v1.0 59 LPAGVKFDPTDQELL-EHLEGKVRSDArklhplIDEFIPtIEGEnGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTTGTRKR 139 799**********.99**9996665443332333665557******.555666688*************** PP NAM 76 ra....tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 r+ t+ + +W++tgk+++v+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l Cotton_A_04481_BGI-A2_v1.0 140 RKvhtdTEggETRWHKTGKTRPVFI-SGKVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 199 745553344667*********.999*******6657999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-38	54	218	IPR003441	NAC domain
PROSITE profile	PS51005	33.856	59	218	IPR003441	NAC domain
Pfam	PF02365	6.7E-16	60	199	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MTWCNDCSDV QTIERSSPPS YHKTVIAQRH KDCLLRACPS CGHQIKYRDQ GGIHDLPGLP 60 AGVKFDPTDQ ELLEHLEGKV RSDARKLHPL IDEFIPTIEG ENGICYTHPE KLPGVSKDGL 120 VRHFFHRPSK AYTTGTRKRR KVHTDTEGGE TRWHKTGKTR PVFISGKVKG YKKILVLYTN 180 YGKQRKPEKT NWVMHQYHLG NNEEEKDGEL VISKVFYQTQ PRQCGSIKDA LKLQSGHEAS 240 HHLKNNNNNG LVEFYNPSFI SFDQGGQSRA NPTQLLPHFA VHDGSFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00459	DAP	Transfer from AT4G28500	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ914146	0.0	JQ914146.1 Gossypium hirsutum NAC domain protein 15 (NAC15) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635339.1	0.0	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-130	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A0B0MNG2	0.0	A0A0B0MNG2_GOSAR; NAC domain-containing 8-like protein
STRING	Gorai.008G155200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2012	28	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-133	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]