PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04480_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1793aa MW: 201568 Da PI: 5.6315

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04480_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.4e-18	29	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Cotton_A_04480_BGI-A2_v1.0 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-18	12	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.13E-16	19	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	26	88	IPR001356	Homeobox domain
CDD	cd00086	4.90E-14	27	83	No hit	No description
Pfam	PF00046	3.7E-16	29	83	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.347	564	623	IPR018501	DDT domain
SMART	SM00571	3.9E-23	564	623	IPR018501	DDT domain
Pfam	PF02791	1.3E-17	565	620	IPR018501	DDT domain
Pfam	PF05066	6.6E-13	745	813	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	954	992	IPR028942	WHIM1 domain
Pfam	PF15613	4.7E-11	1136	1207	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1793 aa Download sequence Send to blast
METGGISGGD GGSSEGEKKK PQEGETKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS 60 VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SKAGNEHGSG 120 GSSLLGHGLD LKRVVPRAGM TIPRYYEMTH SMAELELRAI KFAELQLGEP IRDDGPMFGM 180 EFDPLPPGAF GAPIGNILPI KCLYLLLGAS TAVQQKQPGG PFETKIYDRR DTKTVKGSVR 240 AVCEYQFLLE QPTVRTETYG RFPLSFNYGL PTDGPNARAS SLSAGCSSLL GNEQVQPGYG 300 FPGQIPNLNL LPQQSRPGHL LPTASGEYDY VSRINSSTNT ALDANIGSHP ISALGSPFVS 360 SDRRVCLDDD VLRKERKRKG EEDRITREIE AHEKRIRREL EKQDMLKRKR EEQIRKEMRR 420 HEHEKRKEEE RLLREKHREE ERYQREQRRE LERREKFLMK ESIRAERLRI KEELRKEKEA 480 AKLRATNERA IARKLAKESM EPVEDEYLEL MEIATSSKGL SSTLPLGFEA LQNLDIFRDK 540 LCEFPPKTVQ LKRPFSIQPW NGSEENVGNL LMVWRFLITF ADVLGLWPFT LDELVQAFHD 600 YDPRLLGEIH VALLRSIIKD IEDVARTPST GAGASQNSAA NPGGGHPQIV EGAYAWGFDI 660 CSWQRHLNVL TWPEILRQFA LSAGFGPQLK KRNIQQAYLC DGNEGNNGED IITNLRNGAA 720 ANAIAIMQER GFSNPRRSRH RLTPGTVKFA AFHILSLEGS KGLTVLEVAE KIQKSGLRDL 780 TTNKAQEASI AAAFSRDTKL FDRTAPSTYC VRSPYRKDPA DAEAILSTAR ERIRVFKSEI 840 LGVDAEVAER DEDSESDIPE DPVADDLGAE INAKKEIHNS EERSSSVRET ISGKEESAIM 900 ETPQVEVGNA CKGLSSPHSG GFDKVKQIDA STEQSADAAS SGQEDMEIDE SSPGELWVQG 960 LMEGDYSDLS VEERLNALVA LISIAIEGNF IRIVLKERLE AANALKKQIW TEAQLDKRRI 1020 KEDFVLRTYY SYMGNPVKNR LVMSSAECRE SPQIIGDKKD HDSSVYHVMQ QECLNNPQND 1080 QNCLNNMATE GNLPVQDFSF APDNLQYQQP GYALDRSHSL LKSYIGHKAE EMYAYRSLPL 1140 GQDRRRNRYW RFTTTSCNDP GCGRIFIELL DGHWRLIDTE EGFDALLSFL DVRGIRESLL 1200 HAMLLKIEMS FKEAVARNVN ERQKGDTAKE KANEMASGLD WSVYSESPSS ILCGSDSDMS 1260 ETSSFSIELG RDENEKNNAL KRYQDFEKWM WKECFSSLTF SVMKYGERMC KELLGVCDSC 1320 FNVYFVKDNH CPSCHTTYIA SESALTFSEH VAQCAQKMQM GAELALDGSV FSPLRIRLIK 1380 LQLALLEVCA FSFGPLLRFE RKVVKRDFLV SIYYPIFLRL SIVLLQVSIP FEALQSTWTE 1440 DYRNSWGMKL DSSTTAEELL QILTLLESSI RRDYLSSKFE TTSEVLSPSN LLEHQVDYSS 1500 NLEAVPVLAW IPKTTAAVAL RLMEFNAAIS YTLTQGAETK RDRGAEEFML PPSKYTFVKN 1560 HQDDETMQTP NQYLQKASWD NVGIGFSGSG RGEVRRRGFG VICGGRYQRR PANSRSGSRE 1620 RITTAKSGRL RPVVEWKSRS HRQGGRNHGR LNSRRPKVAN RMVESAGERE SQKEIMGKTS 1680 RSCGMNAWNG DEVALLETGT ADNGRSSESS GYKDEIRDEC DYEEVDEYGG GFNGKDDDGE 1740 GSDYDIDCGE EDEIEERNLN GGYIKENSDE GVRDAADDLP YGYSTEGCSG FSE

Sequence ? help Back to Top

Protein Sequence Length: 1793 aa Download sequence Send to blast

METGGISGGD GGSSEGEKKK PQEGETKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SKAGNEHGSG  120
GSSLLGHGLD LKRVVPRAGM TIPRYYEMTH SMAELELRAI KFAELQLGEP IRDDGPMFGM  180
EFDPLPPGAF GAPIGNILPI KCLYLLLGAS TAVQQKQPGG PFETKIYDRR DTKTVKGSVR  240
AVCEYQFLLE QPTVRTETYG RFPLSFNYGL PTDGPNARAS SLSAGCSSLL GNEQVQPGYG  300
FPGQIPNLNL LPQQSRPGHL LPTASGEYDY VSRINSSTNT ALDANIGSHP ISALGSPFVS  360
SDRRVCLDDD VLRKERKRKG EEDRITREIE AHEKRIRREL EKQDMLKRKR EEQIRKEMRR  420
HEHEKRKEEE RLLREKHREE ERYQREQRRE LERREKFLMK ESIRAERLRI KEELRKEKEA  480
AKLRATNERA IARKLAKESM EPVEDEYLEL MEIATSSKGL SSTLPLGFEA LQNLDIFRDK  540
LCEFPPKTVQ LKRPFSIQPW NGSEENVGNL LMVWRFLITF ADVLGLWPFT LDELVQAFHD  600
YDPRLLGEIH VALLRSIIKD IEDVARTPST GAGASQNSAA NPGGGHPQIV EGAYAWGFDI  660
CSWQRHLNVL TWPEILRQFA LSAGFGPQLK KRNIQQAYLC DGNEGNNGED IITNLRNGAA  720
ANAIAIMQER GFSNPRRSRH RLTPGTVKFA AFHILSLEGS KGLTVLEVAE KIQKSGLRDL  780
TTNKAQEASI AAAFSRDTKL FDRTAPSTYC VRSPYRKDPA DAEAILSTAR ERIRVFKSEI  840
LGVDAEVAER DEDSESDIPE DPVADDLGAE INAKKEIHNS EERSSSVRET ISGKEESAIM  900
ETPQVEVGNA CKGLSSPHSG GFDKVKQIDA STEQSADAAS SGQEDMEIDE SSPGELWVQG  960
LMEGDYSDLS VEERLNALVA LISIAIEGNF IRIVLKERLE AANALKKQIW TEAQLDKRRI  1020
KEDFVLRTYY SYMGNPVKNR LVMSSAECRE SPQIIGDKKD HDSSVYHVMQ QECLNNPQND  1080
QNCLNNMATE GNLPVQDFSF APDNLQYQQP GYALDRSHSL LKSYIGHKAE EMYAYRSLPL  1140
GQDRRRNRYW RFTTTSCNDP GCGRIFIELL DGHWRLIDTE EGFDALLSFL DVRGIRESLL  1200
HAMLLKIEMS FKEAVARNVN ERQKGDTAKE KANEMASGLD WSVYSESPSS ILCGSDSDMS  1260
ETSSFSIELG RDENEKNNAL KRYQDFEKWM WKECFSSLTF SVMKYGERMC KELLGVCDSC  1320
FNVYFVKDNH CPSCHTTYIA SESALTFSEH VAQCAQKMQM GAELALDGSV FSPLRIRLIK  1380
LQLALLEVCA FSFGPLLRFE RKVVKRDFLV SIYYPIFLRL SIVLLQVSIP FEALQSTWTE  1440
DYRNSWGMKL DSSTTAEELL QILTLLESSI RRDYLSSKFE TTSEVLSPSN LLEHQVDYSS  1500
NLEAVPVLAW IPKTTAAVAL RLMEFNAAIS YTLTQGAETK RDRGAEEFML PPSKYTFVKN  1560
HQDDETMQTP NQYLQKASWD NVGIGFSGSG RGEVRRRGFG VICGGRYQRR PANSRSGSRE  1620
RITTAKSGRL RPVVEWKSRS HRQGGRNHGR LNSRRPKVAN RMVESAGERE SQKEIMGKTS  1680
RSCGMNAWNG DEVALLETGT ADNGRSSESS GYKDEIRDEC DYEEVDEYGG GFNGKDDDGE  1740
GSDYDIDCGE EDEIEERNLN GGYIKENSDE GVRDAADDLP YGYSTEGCSG FSE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017637240.1	0.0	PREDICTED: LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1U8M7A4	0.0	A0A1U8M7A4_GOSHI; homeobox-DDT domain protein RLT2-like isoform X3
STRING	Gorai.008G155100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator