PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04432_BGI-A2_v1.0

Common Name

F383_08067

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 176aa MW: 20546.5 Da PI: 10.1799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04432_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.5	1.1e-28	12	100	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY++YAk++GF +r+ +s+k + +g+i++r++ C+keg++++++k+t+ + r+r+++r gC a+++vk+ek gk+ +tk+++e Cotton_A_04432_BGI-A2_v1.0 12 FYDDYAKRMGFLTRIISSRKCELDGSIIHRRLACNKEGFNQNRQKSTRVRIRKRESKREGCMARMNVKREKPGKYIITKFVKE 94 9*******************************************999****************************** PP FAR1 85 HnHela 90 HnH+l+ Cotton_A_04432_BGI-A2_v1.0 95 HNHPLF 100 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	12	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MLFESMQAAK AFYDDYAKRM GFLTRIISSR KCELDGSIIH RRLACNKEGF NQNRQKSTRV 60 RIRKRESKRE GCMARMNVKR EKPGKYIITK FVKEHNHPLF VTSGKDQPYT DDKDKKIQEL 120 SSKLNQANEE LVSCREQLCA FLASIEEQAN QLSKKVEGVV RNIKEVESRD HHSHNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632838.1	1e-128	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Swissprot	Q9SZL8	2e-19	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0B0PRH4	1e-127	A0A0B0PRH4_GOSAR; Far1-related sequence 5-like protein
STRING	EOY04866	4e-89	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19294	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-52	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]