PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04422_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 362aa MW: 42135.9 Da PI: 5.0443

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04422_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.2	2e-16	7	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy..kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 +p G++F+P+ +e+ ++L + v+g+ l+ + + +vdiy + ePw++ k+++++++ F+k +kk ++ r r++ sg Cotton_A_04422_BGI-A2_v1.0 7 VPHGYQFRPSRQEIFIRFLFPIVTGECLPS-SPLIQVDIYgeNKEPWNIF-D-KNSKTSYWVFTKLKKK--SKLRIDRTAGSG 84 589**********************999.678899999334696.2.2334455566666555..468***** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W a kev++ +g+l g k ++f + + + + +W+mhe++l Cotton_A_04422_BGI-A2_v1.0 85 CWLARNA-KEVYDDSGKLLGYHKYFTFSckNDECMNLDNGHWIMHEFSL 132 8865.999999**********9533355566799*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-21	3	148	IPR003441	NAC domain
PROSITE profile	PS51005	23.756	7	148	IPR003441	NAC domain
Pfam	PF02365	3.9E-10	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MLNSSPVPHG YQFRPSRQEI FIRFLFPIVT GECLPSSPLI QVDIYGENKE PWNIFDKNSK 60 TSYWVFTKLK KKSKLRIDRT AGSGCWLARN AKEVYDDSGK LLGYHKYFTF SCKNDECMNL 120 DNGHWIMHEF SLKREDSNDS VICEIRNKNA ADSDSDSKLN MKKRRILSSK KNHEEMNLPS 180 KPNDEEMGLI SIFSSSDDKD LSSDVTFETR NRNDGLDLNL NLKLNEENTR FYVNCEDPKV 240 IYKDVAGSNL NSNKLELDDE EMESISRFSN SNHEDLSSDV TFGIGYRNDS LGLNLNLKSK 300 DEDMRFYINH EDENRHYLRQ NIRISDDSLL YIFPNFIIES NKFEEENLFK SIYENLSKSE 360 NG

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MLNSSPVPHG YQFRPSRQEI FIRFLFPIVT GECLPSSPLI QVDIYGENKE PWNIFDKNSK  60
TSYWVFTKLK KKSKLRIDRT AGSGCWLARN AKEVYDDSGK LLGYHKYFTF SCKNDECMNL  120
DNGHWIMHEF SLKREDSNDS VICEIRNKNA ADSDSDSKLN MKKRRILSSK KNHEEMNLPS  180
KPNDEEMGLI SIFSSSDDKD LSSDVTFETR NRNDGLDLNL NLKLNEENTR FYVNCEDPKV  240
IYKDVAGSNL NSNKLELDDE EMESISRFSN SNHEDLSSDV TFGIGYRNDS LGLNLNLKSK  300
DEDMRFYINH EDENRHYLRQ NIRISDDSLL YIFPNFIIES NKFEEENLFK SIYENLSKSE  360
NG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632574.1	0.0	PREDICTED: NAC domain-containing protein 2-like
TrEMBL	A0A1U8LKG2	0.0	A0A1U8LKG2_GOSHI; NAC domain-containing protein 19-like
STRING	Gorai.005G016000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM35467	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	1e-09	NAC domain containing protein 19