PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04403_BGI-A2_v1.0

Common Name

F383_17891

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 989aa MW: 109873 Da PI: 5.7852

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04403_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.3e-29	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Cotton_A_04403_BGI-A2_v1.0 597 EKNVSFSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 647 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	584	667	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-26	599	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.27E-21	879	974	No hit	No description
Gene3D	G3DSA:3.10.20.240	8.5E-24	889	971	No hit	No description
PROSITE profile	PS51745	17.888	889	971	IPR000270	PB1 domain
SMART	SM00666	6.3E-20	889	971	IPR000270	PB1 domain
Pfam	PF00564	8.8E-16	890	970	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MEYPFSSREK GDGYWVPPRT QMEVGEQFGG NTRNLLFEDP FNYSELMNLD AYGGWCSSSA 60 TTDQMFASFG FFSYPSMSHA SFDSTNSIGQ SSSTYVESGY ALGGMDSSYN CADRTVFLKT 120 DEHFGNTVDS KGVELGVRQH TDGNKQNDTS YLGNLLISRP IGRSLDEKML RALSLFKDLS 180 GEGILAQVWV PIKHGDQYML TTSDQPYLLD QMLLGYREVS RTYTFSAEQK PGSFPGLPGR 240 VFLSRVPEWT SNVIHYSKAE YLRITHAVNH EVRGSIGLPV FQPPEMSCCA VLELVTTKEK 300 PNFHSEMEHV CHALEAVNLR TIARPRFLPQ CLSKNQRAVL AEITDVLRAV CHAHSLPLAL 360 TWIPCNYTEE AENEYIEMRV REGNKSWDGK CVLCIEDTAC YVNEREMQDF VHACVEHYLE 420 GGQGIAGKAL QSNHPFFSAD VKTYDVSGYP LVHHARKFNL NAAVAIRLRS TYTGDDDYIL 480 ELFLPINMKG SLEQQLLLNN LSGTMQRICR TLRTVSDAEI VGERSKFDFQ SVTVPTFPPM 540 AMSQRSSETA LSADSDMNSN HSIPFNESNS ISDGKEADGP PEKAISGLPR QKRSTTEKNV 600 SFSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS 660 VQGVDGGLKF DPATGEFVAA GTVIQEHNPE KTLMFSNKNP PIGISEAFNH EKSSAPLASC 720 LDGEDSVVKW DENECSFGGN NNEAARSLLI PSICQEVKKS IVPLNDCSED SKSVAGAASW 780 ICPKNATIGS YFRQGDNMWG LNKGNPKVEI ADCHFVSLNS SSLAATDEMD TRKEGDDGID 840 EYNRQHTSSS MTDTSNVSGS RLHGSSSSSE KSMEAKYSRM KTCVDSSSKI TIKATYKENT 900 VRFKFEPSAG CFQVYEEVAK RFKVQNGTFQ LNYLDDEGEW VMLVSDSDLH ECLEIMEYVG 960 TRSVKFQVRD VPCTMGSSSS SNCFLSRNS

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MEYPFSSREK GDGYWVPPRT QMEVGEQFGG NTRNLLFEDP FNYSELMNLD AYGGWCSSSA  60
TTDQMFASFG FFSYPSMSHA SFDSTNSIGQ SSSTYVESGY ALGGMDSSYN CADRTVFLKT  120
DEHFGNTVDS KGVELGVRQH TDGNKQNDTS YLGNLLISRP IGRSLDEKML RALSLFKDLS  180
GEGILAQVWV PIKHGDQYML TTSDQPYLLD QMLLGYREVS RTYTFSAEQK PGSFPGLPGR  240
VFLSRVPEWT SNVIHYSKAE YLRITHAVNH EVRGSIGLPV FQPPEMSCCA VLELVTTKEK  300
PNFHSEMEHV CHALEAVNLR TIARPRFLPQ CLSKNQRAVL AEITDVLRAV CHAHSLPLAL  360
TWIPCNYTEE AENEYIEMRV REGNKSWDGK CVLCIEDTAC YVNEREMQDF VHACVEHYLE  420
GGQGIAGKAL QSNHPFFSAD VKTYDVSGYP LVHHARKFNL NAAVAIRLRS TYTGDDDYIL  480
ELFLPINMKG SLEQQLLLNN LSGTMQRICR TLRTVSDAEI VGERSKFDFQ SVTVPTFPPM  540
AMSQRSSETA LSADSDMNSN HSIPFNESNS ISDGKEADGP PEKAISGLPR QKRSTTEKNV  600
SFSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVDGGLKF DPATGEFVAA GTVIQEHNPE KTLMFSNKNP PIGISEAFNH EKSSAPLASC  720
LDGEDSVVKW DENECSFGGN NNEAARSLLI PSICQEVKKS IVPLNDCSED SKSVAGAASW  780
ICPKNATIGS YFRQGDNMWG LNKGNPKVEI ADCHFVSLNS SSLAATDEMD TRKEGDDGID  840
EYNRQHTSSS MTDTSNVSGS RLHGSSSSSE KSMEAKYSRM KTCVDSSSKI TIKATYKENT  900
VRFKFEPSAG CFQVYEEVAK RFKVQNGTFQ LNYLDDEGEW VMLVSDSDLH ECLEIMEYVG  960
TRSVKFQVRD VPCTMGSSSS SNCFLSRNS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633685.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633686.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633687.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633688.1	0.0	PREDICTED: protein NLP9-like
Refseq	XP_017633689.1	0.0	PREDICTED: protein NLP9-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0B0MLL9	0.0	A0A0B0MLL9_GOSAR; Protein NLP8-like protein
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]