PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04403_BGI-A2_v1.0
Common NameF383_17891
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 989aa    MW: 109873 Da    PI: 5.7852
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04403_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.92.3e-29597647252
                      RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                 ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Cotton_A_04403_BGI-A2_v1.0 597 EKNVSFSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 647
                                 89***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.859584667IPR003035RWP-RK domain
PfamPF020426.1E-26599647IPR003035RWP-RK domain
SuperFamilySSF542773.27E-21879974No hitNo description
Gene3DG3DSA:3.10.20.2408.5E-24889971No hitNo description
PROSITE profilePS5174517.888889971IPR000270PB1 domain
SMARTSM006666.3E-20889971IPR000270PB1 domain
PfamPF005648.8E-16890970IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MEYPFSSREK GDGYWVPPRT QMEVGEQFGG NTRNLLFEDP FNYSELMNLD AYGGWCSSSA  60
TTDQMFASFG FFSYPSMSHA SFDSTNSIGQ SSSTYVESGY ALGGMDSSYN CADRTVFLKT  120
DEHFGNTVDS KGVELGVRQH TDGNKQNDTS YLGNLLISRP IGRSLDEKML RALSLFKDLS  180
GEGILAQVWV PIKHGDQYML TTSDQPYLLD QMLLGYREVS RTYTFSAEQK PGSFPGLPGR  240
VFLSRVPEWT SNVIHYSKAE YLRITHAVNH EVRGSIGLPV FQPPEMSCCA VLELVTTKEK  300
PNFHSEMEHV CHALEAVNLR TIARPRFLPQ CLSKNQRAVL AEITDVLRAV CHAHSLPLAL  360
TWIPCNYTEE AENEYIEMRV REGNKSWDGK CVLCIEDTAC YVNEREMQDF VHACVEHYLE  420
GGQGIAGKAL QSNHPFFSAD VKTYDVSGYP LVHHARKFNL NAAVAIRLRS TYTGDDDYIL  480
ELFLPINMKG SLEQQLLLNN LSGTMQRICR TLRTVSDAEI VGERSKFDFQ SVTVPTFPPM  540
AMSQRSSETA LSADSDMNSN HSIPFNESNS ISDGKEADGP PEKAISGLPR QKRSTTEKNV  600
SFSVLQQYFS GSLKDAAKNI GVCPTTLKRI CRQHGISRWP SRKINKVNRS LKKIQTVLDS  660
VQGVDGGLKF DPATGEFVAA GTVIQEHNPE KTLMFSNKNP PIGISEAFNH EKSSAPLASC  720
LDGEDSVVKW DENECSFGGN NNEAARSLLI PSICQEVKKS IVPLNDCSED SKSVAGAASW  780
ICPKNATIGS YFRQGDNMWG LNKGNPKVEI ADCHFVSLNS SSLAATDEMD TRKEGDDGID  840
EYNRQHTSSS MTDTSNVSGS RLHGSSSSSE KSMEAKYSRM KTCVDSSSKI TIKATYKENT  900
VRFKFEPSAG CFQVYEEVAK RFKVQNGTFQ LNYLDDEGEW VMLVSDSDLH ECLEIMEYVG  960
TRSVKFQVRD VPCTMGSSSS SNCFLSRNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633685.10.0PREDICTED: protein NLP9-like
RefseqXP_017633686.10.0PREDICTED: protein NLP9-like
RefseqXP_017633687.10.0PREDICTED: protein NLP9-like
RefseqXP_017633688.10.0PREDICTED: protein NLP9-like
RefseqXP_017633689.10.0PREDICTED: protein NLP9-like
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A0B0MLL90.0A0A0B0MLL9_GOSAR; Protein NLP8-like protein
STRINGEOY047740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]