PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_04401_BGI-A2_v1.0

Common Name

F383_17889

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 433aa MW: 49261.4 Da PI: 4.244

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04401_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.3	2.7e-18	7	154	3	128
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgk......... 72 +G+ F+P+++ l+ yL+ + + g++ ++++i+ di++++PwdLp ++++ ++ e +f ++ kya++k Cotton_A_04401_BGI-A2_v1.0 7 KGYGFKPSEQILM-GYLRDRtLFGRDYLVQDIIDLGhDICNYDPWDLPscNSITPNDPERFFIYPKTYKYANSKskvigtptg 88 699***99888.66666616666677767777657*******43355567889*******9766455555555 PP NAM 73 ..........rknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 nratk+g Wk +g +v+s+ +++++g+k+ L f +++ p+ kt+W + +++l Cotton_A_04401_BGI-A2_v1.0 89 qvpkgeqrqlMINRATKNGKWKVSGDRVNVKSSddTEQVIGIKTRLYFMHNSCPN--KTTWALYQFEL 154 566555544455666***********999777888******777776..******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.235	5	179	IPR003441	NAC domain
Pfam	PF02365	1.1E-6	7	154	IPR003441	NAC domain
SuperFamily	SSF101941	7.06E-19	7	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MNNPKRKGYG FKPSEQILMG YLRDRTLFGR DYLVQDIIDL GHDICNYDPW DLPSCNSITP 60 NDPERFFIYP KTYKYANSKS KVIGTPTGQV PKGEQRQLMI NRATKNGKWK VSGDRVNVKS 120 SDDTEQVIGI KTRLYFMHNS CPNKTTWALY QFELVDIDPC QVRVELGPEP SVETQVTNEY 180 EWTQSEQTNE FITSYPVFDN ENFIDDGNEV ISYHQSQVRV ELGSEPLVET EVANEYGWTQ 240 SEQTNEFITP RPVFDIDDGN EVISNHQSQI NMELIRSLEV PNIGIEDQNQ SYKNIGIDND 300 RTVPDGSNQH NIVAAAENES SILPSNLQDH LIDFINQMEW SDLYNLCRRK DDGLFLDELF 360 DEPQELGPQN QCGINQQVAA GAEIECTNLP PLDVAESSYS TDSVRKRLAM EVEGSGTGVE 420 TELAQQQAKR SRS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MNNPKRKGYG FKPSEQILMG YLRDRTLFGR DYLVQDIIDL GHDICNYDPW DLPSCNSITP  60
NDPERFFIYP KTYKYANSKS KVIGTPTGQV PKGEQRQLMI NRATKNGKWK VSGDRVNVKS  120
SDDTEQVIGI KTRLYFMHNS CPNKTTWALY QFELVDIDPC QVRVELGPEP SVETQVTNEY  180
EWTQSEQTNE FITSYPVFDN ENFIDDGNEV ISYHQSQVRV ELGSEPLVET EVANEYGWTQ  240
SEQTNEFITP RPVFDIDDGN EVISNHQSQI NMELIRSLEV PNIGIEDQNQ SYKNIGIDND  300
RTVPDGSNQH NIVAAAENES SILPSNLQDH LIDFINQMEW SDLYNLCRRK DDGLFLDELF  360
DEPQELGPQN QCGINQQVAA GAEIECTNLP PLDVAESSYS TDSVRKRLAM EVEGSGTGVE  420
TELAQQQAKR SRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017632581.1	0.0	PREDICTED: NAC domain-containing protein 86-like
TrEMBL	A0A0B0MJ25	0.0	A0A0B0MJ25_GOSAR; NAC domain-containing 89-like protein
STRING	Gorai.005G013000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18349	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	8e-17	NAC transcription factor-like 9