PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04320_BGI-A2_v1.0
Common NameF383_08594, F383_10498
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 925aa    MW: 102105 Da    PI: 7.0991
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04320_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.7e-19320419198
                                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+
  Cotton_A_04320_BGI-A2_v1.0 320 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDT 401
                                 99**************************555567778***************9989999999***9.**************** PP

                                 EEEEE-SSSEE..EEEEE- CS
                          B3  80 vvFkldgrsefelvvkvfr 98 
                                 v+F++++  e++lv+++++
  Cotton_A_04320_BGI-A2_v1.0 402 VTFSRKD-PEGKLVMGFRK 419
                                 ****654.88888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-30312429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-19317419IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-22318419No hitNo description
PfamPF023625.3E-16320419IPR003340B3 DNA binding domain
PROSITE profilePS5086311.11320421IPR003340B3 DNA binding domain
SMARTSM010197.0E-21320420IPR003340B3 DNA binding domain
PROSITE profilePS5105014.002594644IPR011124Zinc finger, CW-type
PfamPF074963.8E-11599641IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MASKSCMNVL CGASTSIEWR NGWTLRSGDF ASLCDKCGSA YEQSIFCDVF HSKDSGWRDC  60
NSCGKPLHCG CIASRFLLEL LDGGGINCVS CAKKSGFNHM IEDEKPNEFC MVKADADQLH  120
STSADNQLSG ASIENLQPMQ LSNNAESIGL RQLLQLHNDD SSGSLGQMKQ EEFLPPREIG  180
STCLTSINQA SNGSVQAVKP TTSKVNIFDS LPQTNLSISL GGSLGNQNGF PSSVVDEKSK  240
MSSVLQQASK SRHLLPKPPR SVLATGLEMN AGMVPQIRVA RPPAEGRGRN QLLPRYWPRI  300
TDQELQQISG DSNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS QPEGLPLRIQ  360
DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRKDPE GKLVMGFRKA  420
TNTAVVQETL PPAIPNGTLS SESYFSGVFE NLPIISGYSG LLQSLKGSTD PHLNGLSKHS  480
SLAGGDISGH KSDMHEDRIR EDLLLPSMLT PERKRTRNIG SKSKRLLIDS QDALELKLTW  540
EEAQDLLHPP PSTKPSIVTI EDHDFEEYDV STFPGILGEP PVFGKRSIFA VRSTGGQEQW  600
AQCDNCSKWR RVPVDALLPP KWTCADNNWD QSRSSCSLPD ELTPRELEIL LRLNRDFKKR  660
RIIAFHRQTQ EHESSPGLNA LANAAILGDN VADSGTTPVA TTTKHPRHRP GCSCIVCIQP  720
PSGKGKHKPT CTCNVCLTVK RRFKTLMMRK KKRQSEREAE IALRNQQAWR TREEAEVESS  780
SKHVSSHHDP SENEARSVNE LESKNQSNNN KLVSKSVEAN KGRIDLNCDP CRDDDSQFAS  840
STRMSMMNLL HVASLPLETY LKENGLTSLV SDQQAISTSH APPQAGNTSE PHDDQCFHSA  900
TKEHETRDEV NIETKTVRIN NEIDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-692984272131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1739750KRRFKTLMMRKK
2739752KRRFKTLMMRKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5769795e-72JX576979.1 Gossypium hirsutum clone NBRI_GE8713 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632358.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A0B0NN340.0A0A0B0NN34_GOSAR; B3 domain-containing transcription repressor VAL2-like protein
STRINGGorai.005G004300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]