PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04266_BGI-A2_v1.0
Common NameF383_26914
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 826aa    MW: 90535 Da    PI: 6.1393
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04266_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.4e-182785357
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cotton_A_04266_BGI-A2_v1.0 27 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                                56789****************************************************97 PP
2START133.32.8e-421663432174
                                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEE CS
                       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlev 84 
                                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++  e+   
  Cotton_A_04266_BGI-A2_v1.0 166 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWLRDCRNLEVFTM 247
                                 7899******************************************************.7777777777*******9999999 PP

                                 ECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS
                       START  85 issg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161
                                    g  g+++l ++++ a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+
  Cotton_A_04266_BGI-A2_v1.0 248 FPAGsgGTIELVYTQMFAPTTLAPaRDFWTLRYTTTLENGSFVVCERSLSGSGAGPStaaAAQFVRAEVLPSGYLIRPCEGGG 330
                                 999888********************************************88888877999********************** PP

                                 EEEEEEE-EE--S CS
                       START 162 skvtwvehvdlkg 174
                                 s +++v+h +l++
  Cotton_A_04266_BGI-A2_v1.0 331 SIIHIVDHLNLEA 343
                                 *********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3372286IPR001356Homeobox domain
SuperFamilySSF466892.14E-162388IPR009057Homeodomain-like
SMARTSM003891.7E-152490IPR001356Homeobox domain
CDDcd000864.65E-162787No hitNo description
PfamPF000467.3E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-182985IPR009057Homeodomain-like
CDDcd146864.76E-679118No hitNo description
PROSITE profilePS5084823.501156342IPR002913START domain
Gene3DG3DSA:3.30.530.205.6E-18165342IPR023393START-like domain
SuperFamilySSF559611.0E-30165342No hitNo description
SMARTSM002343.2E-31165375IPR002913START domain
PfamPF018521.2E-39166343IPR002913START domain
SuperFamilySSF559612.75E-5381475No hitNo description
SuperFamilySSF559612.75E-5510577No hitNo description
PfamPF086702.5E-45676825IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MAMAVAQHRV STSGSSSINK HLDASGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLS AMNKLLMEEN DRLQKQVSQL  120
VCENGYMRQQ LHTVNASATD ASCDSVVTTP QHSLRDPNNP AGLLSIAEET LAEFLSKATG  180
TAVDWVQMPG MKPGPDSVGI FAISQSCSGV AARACGLVSL EPTKIAEILK DRPSWLRDCR  240
NLEVFTMFPA GSGGTIELVY TQMFAPTTLA PARDFWTLRY TTTLENGSFV VCERSLSGSG  300
AGPSTAAAAQ FVRAEVLPSG YLIRPCEGGG SIIHIVDHLN LEALRYVKQI AQETSGEVVY  360
SMGRQPAVLR TFSQRLSRGF NDAINGFNDD GWSIMNCDGN EDVIIAINSS KSFSCTSNPN  420
NALPFVGGVL CAKASMLLQN VPPAVLVRFL REHRSEWADF NVDAYTAASL KAGTYAYPGM  480
RPTRFTGSQI IMPLGHTIEH EEILEVIRLE GHSLVQEDAF VSRDIHLLQI CSGIDENAVG  540
ACSELVFAPI DEMFPDDAPL IPSGFRIIPL ESKPSDTKDS LTTNRTLDLT SSLEVGPATN  600
HSSGDVPSSQ NSRSVLTIAF QFPFDSSLQD NVATMARQYV RSVISSVQRV AMAISPSGLS  660
TAVGPKLSPG SPEALTLAQW IYQSYRQVAS VLVNLRAELL RSESLGSDSI LKNLWQHQDA  720
ILCCSLKSLP VFIFANQAGL DMLETTLVSL QDITLDKIFD EPGRKALCSD FAKLMQQGYA  780
YFPAGICMST MGRHVSYEQA VAWKVLEADE STVHCLAFSF VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642744.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X3
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2P5XTI50.0A0A2P5XTI5_GOSBA; Uncharacterized protein
STRINGGorai.003G142200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]