PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04263_BGI-A2_v1.0 | ||||||||
Common Name | F383_18691 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 686aa MW: 75503.7 Da PI: 8.2214 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.2 | 1.5e-23 | 108 | 209 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ d +g++W++++iyr++++r++lt+GW+ Fv+ ++L + Cotton_A_04263_BGI-A2_v1.0 108 FAKTLTQSDANNGGGFSVPRYCAETIfpsldytADPPVQ--TVVAVDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVA 188 89****************************997556555..8***************************************** PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD++vF + ++++ l+v+++r+ Cotton_A_04263_BGI-A2_v1.0 189 GDSIVFLR--SENGGLCVGIRRA 209 *******4..477778****996 PP | |||||||
2 | Auxin_resp | 117.4 | 1.2e-38 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 aa+ a+++++FevvY+Prast+eF+vk+++v++a++v+++ GmRfkmafetedss++++ +Gt ++v+ +dp+rWpnS+Wr+L Cotton_A_04263_BGI-A2_v1.0 257 AATLAASGQPFEVVYYPRASTPEFCVKASSVKAAMRVPWCCGMRFKMAFETEDSSRISWfMGTLSSVQVVDPIRWPNSPWRLL 339 68899*****************************************************************************9 PP Auxin_resp 83 k 83 + Cotton_A_04263_BGI-A2_v1.0 340 Q 340 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-37 | 100 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-28 | 106 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-21 | 107 | 208 | No hit | No description |
SMART | SM01019 | 4.0E-22 | 108 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-21 | 108 | 209 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 108 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 257 | 340 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.015 | 574 | 654 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MKESEKSLDP QLWHACAGPM VQIPPLNSKV FYFPQGHAEH SLAAVDFPSS PPVPALVLCR 60 VASLKFMADT ETDEVYAKIL LMPLPSTELD IENDTVFGSD NAEKPASFAK TLTQSDANNG 120 GGFSVPRYCA ETIFPSLDYT ADPPVQTVVA VDVHGETWKF RHIYRGTPRR HLLTTGWSTF 180 VNHKKLVAGD SIVFLRSENG GLCVGIRRAK RGTGNGPEAG SPFLSFLRED ESKMMMMNRN 240 GDWRGKGKLK AEAVLQAATL AASGQPFEVV YYPRASTPEF CVKASSVKAA MRVPWCCGMR 300 FKMAFETEDS SRISWFMGTL SSVQVVDPIR WPNSPWRLLQ VTWDEPDLLQ NVKRVSPWLV 360 ELVSNVPAIH LSPFSPPRKK SRFPQHLDFP LDGQFPMSAF SSNGNPHGTG CPLVLSDNAP 420 AGIQGARHAQ FGLSLSDLHL NNKLQSGLFL PGFQRFDPHS RISDGIMMAR RPNGTDNLSC 480 LLTIGNSNVN EKSGNTKRHQ FLLFGQPILT EQQLSRSCSS EVVSQVINGN SSLDGSAEKT 540 KDTSDGSRSS LEKSSTAGFL WHQDYRSTET GLDIGHCKVF LDSEDVGRTL DLSVLGSYEE 600 LYRRLANMFG IERSKMLGHV LYRDATGAVK QTGEEPFSAF MKTAKRLTIR MDSSNETVAR 660 SWLTGIRTAE NGLGGPSKRG PLSIFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 4e-84 | 8 | 361 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ003610 | 0.0 | DQ003610.1 Gossypium raimondii putative auxin response factor 10 (ARF10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017638542.1 | 0.0 | PREDICTED: auxin response factor 10-like isoform X1 | ||||
Refseq | XP_017638543.1 | 0.0 | PREDICTED: auxin response factor 10-like isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0B0MNH7 | 0.0 | A0A0B0MNH7_GOSAR; Auxin response factor | ||||
STRING | Gorai.003G142500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Publications ? help Back to Top | |||
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