PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04252_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 678aa    MW: 74394.3 Da    PI: 6.6824
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04252_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-094775141954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Cotton_A_04252_BGI-A2_v1.0 477 FEHflHPYPSDTDKHMLATQTGLSRNQVSNWFINARVR 514
                                 564459******************************87 PP
2BELL57.82.8e-19351405671
                        BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                                 q+kkakLl l+           e++q+v+ssFe vagl sa+pY+slAlk++ ++Frc+k+ai+++
  Cotton_A_04252_BGI-A2_v1.0 351 QQKKAKLLYLQ-----------EEMQMVVSSFESVAGLSSATPYVSLALKTVEKNFRCIKNAISDR 405
                                 55555555554...........67***************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-22253404IPR006563POX domain
PfamPF075261.7E-24258403IPR006563POX domain
PROSITE profilePS5007112.195455518IPR001356Homeobox domain
CDDcd000865.03E-12458519No hitNo description
SMARTSM003891.4E-8458522IPR001356Homeobox domain
SuperFamilySSF466894.28E-17459524IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-28461522IPR009057Homeodomain-like
PfamPF059202.5E-18475514IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MDMSKSKLES HVAQQSRRDK LRVHHLGLNP DLVQVRSVRN ANLLYDPTFV SPHQELTEDE  60
ESCSREMPAN GSCKIPGDPQ SCGDWVMGYG INQNPMFDAA MGYPKPNYSE ICSQDSKRHC  120
GELHFVSSSL YDVVTTASLG TQGLEMASMT HQASALQCGN GGGAWTNIRP VLEDGQQWAN  180
AATNTTQGLS LTLSSNTTCG AAQFTDDQFC SHRFKESQDS KALDTAHLYS MQKPSIISKD  240
SGNSTCVPLG PFTGYATILK NSKFLKPAQQ LLDQYCHIAN SKLAKVCETS DAVIGDIGDL  300
ASADDANAVD MGDRAIKGNN SGASISSFCS SNEISVAVGI GSSSSCRPEY QQKKAKLLYL  360
QEEMQMVVSS FESVAGLSSA TPYVSLALKT VEKNFRCIKN AISDRVRHIC RALGEDLLSS  420
TTGASSSKGD INMSRLKYEV QKSGGVNVGF LEPQQQGWRP QRGLPERAVA ILRAWLFEHF  480
LHPYPSDTDK HMLATQTGLS RNQVSNWFIN ARVRVWKPMV EEIHMLESKG LAENNPNSSK  540
TTEAKSPSTN RPNEDQPIDR PCINATSMEQ LICSGTAVAG TTGDAHDTER WFHDKPLRMD  600
FRIPTSMEGS LLSFAPYEQS RLEMGGLGAV SLTLGLRHGV ETAQAHQHQH RHRQQQYQSQ  660
EDQLQRPFGG QMVHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16464521158Homeobox protein Meis1
4xrs_B1e-16464521158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5807344e-72JX580734.1 Gossypium hirsutum clone NBRI_GE13227 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641014.10.0PREDICTED: BEL1-like homeodomain protein 8
TrEMBLA0A1U8PXN70.0A0A1U8PXN7_GOSHI; BEL1-like homeodomain protein 8 isoform X1
STRINGGorai.003G143600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143211520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-79BEL1-like homeodomain 8