PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04183_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18901.4 Da PI: 6.8575 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 7 | 100 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++ da+sslvyeA+ar+rdPvyG+vg i+ l Cotton_A_04183_BGI-A2_v1.0 7 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQR------ADAVSSLVYEANARVRDPVYGCVGAISYL 83 7*********************************************86......99*************************** PP DUF260 84 qqqleqlkaelallkee 100 q+q++ql+ +la++++e Cotton_A_04183_BGI-A2_v1.0 84 QNQVSQLQMQLAVAQTE 100 ************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.941 | 6 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-39 | 7 | 98 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGSGSSPCAS CKLLRRRCAK DCIFAPYFPS DDPHKFAIVH KVFGASNVSK MLQRADAVSS 60 LVYEANARVR DPVYGCVGAI SYLQNQVSQL QMQLAVAQTE ILCIQMQHHQ DDSALALPTQ 120 MQHHDDDDYK PFLLPTTHNL DNISQYINFA SSSNVIQDPA ATVKRESLWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 2 | 102 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 2 | 102 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471684.1 | 1e-122 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-70 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A0D2QTT2 | 1e-121 | A0A0D2QTT2_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2P5PWM9 | 1e-121 | A0A2P5PWM9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G149600.1 | 1e-122 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-72 | LBD family protein |
Publications ? help Back to Top | |||
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