PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_04070_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 21209.3 Da PI: 8.4795 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.5 | 2e-42 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++l Cotton_A_04070_BGI-A2_v1.0 18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRVDAANSLVYEANVRLRDPVYGCMGAISAL 100 7********************************************************************************** PP DUF260 84 qqqleqlkaelallkee 100 qqq+++l+ael+++++e Cotton_A_04070_BGI-A2_v1.0 101 QQQVQSLQAELNAVRAE 117 *************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.728 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-42 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGRRHMLGPP GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS 60 KMLMEVPESQ RVDAANSLVY EANVRLRDPV YGCMGAISAL QQQVQSLQAE LNAVRAEIIK 120 YKCREANLVP PSSHVAMLSS GAVSVAAPPP ATTQPPPPPP PPPLPTTTAV TTCSIYTQPT 180 TSTDYTTLPN DNVSYFG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-47 | 10 | 130 | 3 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-47 | 10 | 130 | 3 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605164.1 | 1e-143 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 6e-75 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A0D2QQ34 | 1e-140 | A0A0D2QQ34_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G295000.1 | 1e-140 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1927 | 27 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-74 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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