PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04008_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 459aa    MW: 52379.8 Da    PI: 6.8946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04008_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.73.2e-95764571374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 l++lLl  A+ v++++ + a   L++l + +s  gd++qR++ayf+ +L arl+   s  y+ +  ++t+    +ee+ a++ 
  Cotton_A_04008_BGI-A2_v1.0  76 LIHLLLITATSVDENNVNSALDNLTQLYQSVSLMGDSVQRVVAYFADGLVARLLTRKSPFYDMIMKEPTA----EEEFLAFTC 154
                                 689****************************************************999***999888886....78889999* PP

                        GRAS  84 fsevsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeele 159
                                 ++ vsP+++f+h+taNqaI ea e+e     +++H+iDfd+ +G+QWp+L+q+L++++  ++  slR+Tg+g     s  el+
  Cotton_A_04008_BGI-A2_v1.0 155 LYRVSPYYQFAHFTANQAIIEAYEKEeeinnRALHVIDFDVAYGFQWPSLIQSLSEKAsgGNRISLRLTGFGT----SFAELQ 233
                                 *************************955554555***********************9634455*********....9***** PP

                        GRAS 160 etgerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                 et++rL +f + + ++ fef+ l    l   +l +Lr k++E++aVnlv++l +l  +s+++++    +Lk v+s +P +vv+
  Cotton_A_04008_BGI-A2_v1.0 234 ETENRLVSFTKGFrNLVFEFQGL----LRGSKLTNLRKKKNETVAVNLVFHLNTLN-NSMKISD----TLKSVRSHRPSIVVL 307
                                 ***********9758*******8....7777889******************9996.6666666....*************** PP

                        GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae....rrerhetlekWrerle 320
                                 veqe  ++  sFl rf+e+l+y++a+fdsl+  lp es er ++E+  lg+ei++++ c ++e    +  r e++e+W++r+e
  Cotton_A_04008_BGI-A2_v1.0 308 VEQEGGRSPRSFLSRFMESLHYFAAMFDSLDDCLPVESAERLSIEKNHLGKEIKSMINCDKDEennkSSSRYEKMETWKNRME 390
                                 ***********************************************************887633336789************ PP

                        GRAS 321 eaGFkpvplsekaakqaklllr........kvk...sdgyrveee..sgslvlgWkdrpLvsvSaWr 374
                                 + GF+  +ls+k   qaklll+        +++   + g+rv e+   ++l lgW+dr L+++SaW+
  Cotton_A_04008_BGI-A2_v1.0 391 SHGFEGTKLSSKCLIQAKLLLKitthycplQCEgevNGGFRVFERdeAKALSLGWQDRCLLTASAWQ 457
                                 ********************98333222221221222347777653355667**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.55150424IPR005202Transcription factor GRAS
PfamPF035141.1E-9276457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEDDAYEEEP LNLSLTIMAD PSGEKINRKR KRRVPLPSSY EGCEGKIFKL LQVREEMLKL  60
DHKRKGVVED GKALHLIHLL LITATSVDEN NVNSALDNLT QLYQSVSLMG DSVQRVVAYF  120
ADGLVARLLT RKSPFYDMIM KEPTAEEEFL AFTCLYRVSP YYQFAHFTAN QAIIEAYEKE  180
EEINNRALHV IDFDVAYGFQ WPSLIQSLSE KASGGNRISL RLTGFGTSFA ELQETENRLV  240
SFTKGFRNLV FEFQGLLRGS KLTNLRKKKN ETVAVNLVFH LNTLNNSMKI SDTLKSVRSH  300
RPSIVVLVEQ EGGRSPRSFL SRFMESLHYF AAMFDSLDDC LPVESAERLS IEKNHLGKEI  360
KSMINCDKDE ENNKSSSRYE KMETWKNRME SHGFEGTKLS SKCLIQAKLL LKITTHYCPL  420
QCEGEVNGGF RVFERDEAKA LSLGWQDRCL LTASAWQCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-558445627378Protein SCARECROW
5b3h_A1e-558445626377Protein SCARECROW
5b3h_D1e-558445626377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RKRKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604621.10.0PREDICTED: scarecrow-like protein 21
TrEMBLA0A2P5WVD20.0A0A2P5WVD2_GOSBA; Uncharacterized protein
STRINGGorai.009G289600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15761916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.14e-54SCARECROW-like 21