PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03998_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 418aa    MW: 44401.8 Da    PI: 7.263
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03998_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.71.4e-4093185289
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 
                                 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s
  Cotton_A_03998_BGI-A2_v1.0  93 PAAKRPTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGS 175
                                 6789*****************************************************************99977777777777 PP

                         TCP  84 nsssg....k 89 
                                 + s++    +
  Cotton_A_03998_BGI-A2_v1.0 176 TISAPpsksA 185
                                 4333332220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.32599153IPR017887Transcription factor TCP subgroup
PfamPF036344.0E-3899204IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MESQSNKSSN SSEHHHHHHG QKQEASLQLV SRDGQPQAAA GAAHGTSSHQ AQAQTQAQPQ  60
APGHHVSFMG SISNQIGVPS SSPTSTSSLA KPPAAKRPTK DRHTKVDGRG RRIRMPAVCA  120
ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSTLNVSL RSSGSTISAP  180
PSKSAPLSFH SALGFYNSNG DEARRIGNST AMLGFHHQLY PQLLNPETHM RSGGNPNDNY  240
ATKPFRDDLF KETSQHNTET DAIDANSPKP ERTGMPEQEP GLFQTTNVMP APAMWAVAPA  300
TTNGGNAFWM LPVGGGATAA SATVPEAQMW TFPAHYSGGG RGNPVQLGSM ILQQQQAGGQ  360
QLGLGVTETN MGLLGSGMNV YSNNNRVGLK MNLEQQHHHE NQTQGSDSGD ENPATDSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00614PBMTransfer from AT1G35560Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5252791e-150HQ525279.1 Gossypium herbaceum clone NBRI_A2_462 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017603640.10.0PREDICTED: transcription factor TCP23
SwissprotQ9LQF01e-82TCP23_ARATH; Transcription factor TCP23
TrEMBLA0A0D2S9Z90.0A0A0D2S9Z9_GOSRA; Uncharacterized protein
STRINGGorai.009G289000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.14e-68TCP family protein