PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03997_BGI-A2_v1.0
Common NameF383_13048
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 279aa    MW: 31374.2 Da    PI: 8.7915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03997_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l+d+++++G g+W++ ++  g+ R++k+c++rw +yl
  Cotton_A_03997_BGI-A2_v1.0 14 KGAWTKEEDQRLIDYIRLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                                79******************************99************97 PP

2Myb_DNA-binding55.61.2e-1767111147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg++++ Edel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  Cotton_A_03997_BGI-A2_v1.0  67 RGNFSEAEDELIIKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                                 89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.586961IPR017930Myb domain
SMARTSM007174.9E-141363IPR001005SANT/Myb domain
SuperFamilySSF466895.39E-2913108IPR009057Homeodomain-like
PfamPF002493.8E-161461IPR001005SANT/Myb domain
CDDcd001675.45E-111661No hitNo description
PROSITE profilePS5129428.45262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.7E-2865117IPR009057Homeodomain-like
SMARTSM007172.5E-1766114IPR001005SANT/Myb domain
PfamPF002493.1E-1667111IPR001005SANT/Myb domain
CDDcd001673.78E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF SEAEDELIIK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLISRG  120
IDPQNHGPLN QPTNTNKSTE LDFRNVPKAS KSNFAPNPSR DFNFNEFQVK AKAESIEEGN  180
SSSSGMTTDE EQQQQQEDKY AGNSQELDLE LSIGISSSGK NNNSTGVSTA NSAESKPLLD  240
KSNFQFLGQA MAAKAVCLCW QLGFGTSEIC RNCQKYKWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4217960.0EF421796.1 Gossypium hirsutum MYB10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017602780.10.0PREDICTED: transcription repressor MYB6-like
SwissprotQ388516e-98MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A0B0N9420.0A0A0B0N942_GOSAR; Transcription factor MYB3-like protein
STRINGGorai.009G288900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.13e-89myb domain protein 3