PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03933_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 719aa MW: 78895.7 Da PI: 7.191 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.1 | 9.5e-25 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+lt sd++++g +++p++ ae++ ++ ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +g Cotton_A_03933_BGI-A2_v1.0 164 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyDQ-QRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSG 245 99****************************9743.345679****************************************** PP -EEEEEE-SSSEE..EEEEE-S CS B3 78 DfvvFkldgrsefelvvkvfrk 99 D v+F + +++el+++++r+ Cotton_A_03933_BGI-A2_v1.0 246 DAVLFL--RGEDGELRLGIRRA 265 ******..449999*****996 PP | |||||||
2 | Auxin_resp | 119.7 | 2.2e-39 | 290 | 371 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+s+ksvF+++YnPras+seF+v+v k++k+l++++svGmRfkm+fete+++err sG+++g+sdldpvrWp+SkW++L Cotton_A_03933_BGI-A2_v1.0 290 AVHAISMKSVFSIYYNPRASSSEFIVPVCKFRKSLDRSFSVGMRFKMRFETENAPERRSSGLITGTSDLDPVRWPGSKWKCL 371 79*******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-41 | 160 | 271 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-39 | 161 | 267 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.14E-22 | 162 | 264 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-22 | 164 | 265 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-22 | 164 | 266 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.5E-34 | 290 | 371 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MGCLIDLNTT EEDETPSSCS LSPSSVLSAS GFSSSVCLEL LHACVGPLIS LPKKGSVVVY 60 FPQGHLEQAP EFSGLASVYD LPPHVFCRVL DVKLHVSYLY TCFFQSCRFY FVCKSYKAEG 120 ATDEVYAQVS LVPDNEQTEQ NLQEVDGDDE DAEADMKLAT PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF APLDYDQQRP SQELVAKDLH GVEWRFRHIY RGQPRRHLLT TGWSAFVNKK 240 KLVSGDAVLF LRGEDGELRL GIRRAAQIKN GASFLSLCSK QLNRSTFADA VHAISMKSVF 300 SIYYNPRASS SEFIVPVCKF RKSLDRSFSV GMRFKMRFET ENAPERRSSG LITGTSDLDP 360 VRWPGSKWKC LSVRWDDIDA NKHGRVSPWE IELSGSISSS NCLLSPCSKR NRVGLPSGKP 420 EFMVPDGIGA PDFGEPLRFQ KVLQGQEILG FSTLYNGADS HNMHRSEIRR CFPGSNGSGI 480 ATIGNVGRDP PLNPVISYKG VGFGESFGFH KVLQGQEIFL SSLYRKGSTM EETRGNDSAG 540 LTNVGQMSGT RSGWSSSMQG YNTHSPVQPS VQVSSPSSVL MFQQASNPVP NFNSTRNFNQ 600 EMERGVSSFR VPETYGAKLL SSSISEHDSQ PLAAQPSFGT NQELASCKNS CRLFGFSLTE 660 GDLDTTKEDS VVHATLSLGR GSLLPCIGEN FHPNPPAVTS TGSNCTKSKQ SLCCQRYAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldx_A | 1e-110 | 32 | 402 | 15 | 363 | Auxin response factor 1 |
4ldx_B | 1e-110 | 32 | 402 | 15 | 363 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012456157.1 | 0.0 | PREDICTED: auxin response factor 3-like isoform X4 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A0D2ULL9 | 0.0 | A0A0D2ULL9_GOSRA; Auxin response factor | ||||
STRING | Gorai.011G030900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4924 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |