PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03930_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 263aa    MW: 29635.7 Da    PI: 5.9698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03930_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.8e-50121421128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeel+ +yL++kv  ++  + ++++i++v+iyk++Pw+Lp k+  +e+ew+fFs+r++ky++g+r+nra++sg
  Cotton_A_03930_BGI-A2_v1.0  12 LPPGFRFHPTDEELIIHYLNQKVFPSSnhHLTFSIIADVNIYKFNPWELPDKALFGENEWFFFSPRERKYPNGTRPNRAAASG 94 
                                 79********************9877743334578***************8777899************************** PP

                         NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatg+dk+++++ +++  g+kk L+fykgr pkg+ktdW+m eyrl
  Cotton_A_03930_BGI-A2_v1.0  95 YWKATGTDKPIIASaGSQCLGMKKALAFYKGRPPKGVKTDWMMIEYRL 142
                                 ***********99867777***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-608169IPR003441NAC domain
PROSITE profilePS5100557.4612169IPR003441NAC domain
PfamPF023652.4E-2413142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDGNNRSNVA NLPPGFRFHP TDEELIIHYL NQKVFPSSNH HLTFSIIADV NIYKFNPWEL  60
PDKALFGENE WFFFSPRERK YPNGTRPNRA AASGYWKATG TDKPIIASAG SQCLGMKKAL  120
AFYKGRPPKG VKTDWMMIEY RLLDDCFVSQ RPKGSMQLDD WVLCRVSHKG KAPLAGGYLQ  180
GQEMAIQITI GINEYDHQLP TMDQMVGLES EELDEKVFQE GSPEYPPTPI DTSMREVLKS  240
IERVLSVGAL DEMVKASSSN DGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-651116916165NO APICAL MERISTEM PROTEIN
1ut4_B4e-651116916165NO APICAL MERISTEM PROTEIN
1ut7_A4e-651116916165NO APICAL MERISTEM PROTEIN
1ut7_B4e-651116916165NO APICAL MERISTEM PROTEIN
3swm_A5e-651116919168NAC domain-containing protein 19
3swm_B5e-651116919168NAC domain-containing protein 19
3swm_C5e-651116919168NAC domain-containing protein 19
3swm_D5e-651116919168NAC domain-containing protein 19
3swp_A5e-651116919168NAC domain-containing protein 19
3swp_B5e-651116919168NAC domain-containing protein 19
3swp_C5e-651116919168NAC domain-containing protein 19
3swp_D5e-651116919168NAC domain-containing protein 19
4dul_A4e-651116916165NAC domain-containing protein 19
4dul_B4e-651116916165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711083.10.0PREDICTED: NAC transcription factor 56-like
SwissprotO492555e-72NAC29_ARATH; NAC transcription factor 29
TrEMBLA0A2P5Y2A90.0A0A2P5Y2A9_GOSBA; Uncharacterized protein
STRINGGorai.011G030600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1928557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-74NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Zhang K,Gan SS
    An abscisic acid-AtNAP transcription factor-SAG113 protein phosphatase 2C regulatory chain for controlling dehydration in senescing Arabidopsis leaves.
    Plant Physiol., 2012. 158(2): p. 961-9
    [PMID:22184656]
  2. Zhang K,Halitschke R,Yin C,Liu CJ,Gan SS
    Salicylic acid 3-hydroxylase regulates Arabidopsis leaf longevity by mediating salicylic acid catabolism.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(36): p. 14807-12
    [PMID:23959884]
  3. Shinozaki Y, et al.
    Expression of an AtNAP gene homolog in senescing morning glory (Ipomoea nil) petals of two cultivars with a different flower life span.
    J. Plant Physiol., 2014. 171(8): p. 633-8
    [PMID:24709156]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  6. Seok HY, et al.
    Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response.
    Planta, 2017. 245(2): p. 329-341
    [PMID:27770200]