PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03920_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26793.8 Da PI: 8.9649 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.2e-20 | 22 | 72 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++aa+++++g+ Cotton_A_03920_BGI-A2_v1.0 22 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 72 69*******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.2E-36 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-32 | 22 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.67 | 22 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-18 | 22 | 79 | No hit | No description |
Pfam | PF00847 | 6.1E-14 | 22 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAPREKTADV KGKGNECNKE VHFRGVRKRP WGRYAAEIRD PGKKSRVWLG TFDTAEEAAK 60 AYDAAAREFR GAKAKTNFPL PCEILNNGSN CNNNGDTNCS NNNNNHSPSR SSTVESSSHE 120 PPTLVKCSPL DLNLGHAAVT GYGSPAVRLP FPQISPVAGF FANGVSAVAA PQVFYFDALV 180 RPGVMKGQQY QQRLRFDHRD YHETFNAGVQ SDSDSSSVVD LNHREIKRRP LLNIDLNQPA 240 PEVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 22 | 80 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 19 | 80 | 2 | 64 | ATERF1 |
3gcc_A | 2e-21 | 19 | 80 | 2 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF850521 | 0.0 | KF850521.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647150.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A1U8LDH4 | 1e-178 | A0A1U8LDH4_GOSHI; ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2P5Y2D0 | 1e-178 | A0A2P5Y2D0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.011G029800.1 | 1e-124 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24360 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-28 | erf domain protein 9 |