PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03896_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HSF | ||||||||
Protein Properties | Length: 220aa MW: 25480.5 Da PI: 8.4796 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.1 | 1.2e-32 | 24 | 128 | 2 | 103 |
HHHHHHHHHC............TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS HSF_DNA-bind 2 Flkklyeile............deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 Fl k+y +le +++ k+++sw+++g+ fvv+ + ef++ Lp+yFkh+nf+SF+RQLn+YgFkk+++++ Cotton_A_03896_BGI-A2_v1.0 24 FLAKTYALLEegeeeesgeegcSRRRKKIVSWNNEGTGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKTSSRR--- 103 99********6666555555555599**************************************************9998... PP TTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 73 kskekiweFkhksFkkgkkellekikrkkse 103 weFkh++F++g k++l +i rkkse Cotton_A_03896_BGI-A2_v1.0 104 ------WEFKHEKFQRGYKQMLMEITRKKSE 128 ......**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-34 | 15 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.3E-39 | 20 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 9.11E-26 | 20 | 125 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.2E-28 | 24 | 125 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MMSNKMSSNY SSLSSPKAKG PAPFLAKTYA LLEEGEEEES GEEGCSRRRK KIVSWNNEGT 60 GFVVWSPAEF SDLTLPRYFK HNNFSSFIRQ LNTYGFKKTS SRRWEFKHEK FQRGYKQMLM 120 EITRKKSEPS VFPAFLKASS SSDDHQDHHH HQIMNDGSSA VDEESTNVHR QTLIEENQNL 180 RREKVELQTQ IAQFKDLQIK LLDCIAQHTG TSDHKETRLC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-15 | 1 | 125 | 3 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-15 | 1 | 125 | 3 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-15 | 1 | 125 | 3 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR067414 | 0.0 | KR067414.1 Gossypium hirsutum HSF33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648418.1 | 1e-166 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A0D2UN80 | 1e-161 | A0A0D2UN80_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G027400.1 | 1e-162 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16597 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36990.1 | 6e-34 | heat shock factor 4 |