PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03807_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 233aa    MW: 26648.1 Da    PI: 10.5469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03807_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.3e-12109150351
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Cotton_A_03807_BGI-A2_v1.0 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                                 79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-6108151IPR001471AP2/ERF domain
SMARTSM003801.0E-4108167IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-8109152IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-6111161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVSLRRRKLL GLCSGRSSFF TPFPRAFDNG NIPENSSHNA KSVSLHPLPS DFINHVHGKS  60
IAKVDFASPN VSGSGSSKEH HSQPFPGQPI KHRKRHRRKH LQNQEQCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNIDL PEEEKQELRK FKWDEFLAYT  180
RRSITNKKYK RRLEVEAQKR PVSATANDEW DTKQVVKNSF SASEDMGPDS SAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629503.11e-176PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_017629504.11e-176PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
RefseqXP_017629505.11e-176PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A1U8LAM81e-174A0A1U8LAM8_GOSHI; ethylene-responsive transcription factor-like protein At4g13040 isoform X2
STRINGGorai.007G156300.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-47ERF family protein