PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03720_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 413aa    MW: 45056.9 Da    PI: 4.826
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03720_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06444539
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                +C+ +++++   +C+++  +lC +C  + H+       H++
  Cotton_A_03720_BGI-A2_v1.0  4 ICDFCGDQPSLVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                                7*****************************65677777765 PP
2zf-B_box20.41.1e-064689441
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                  C++++++++   C + ++ lC++C   +H        H++++
  Cotton_A_03720_BGI-A2_v1.0 46 LLCERCNSQPAFVRCAEEKVSLCQNCDWMGHDAstsnstHKRQT 89
                                57*****************************4477788888766 PP
3CCT62.99.7e-22356399144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Cotton_A_03720_BGI-A2_v1.0 356 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 399
                                 889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.271147IPR000315B-box-type zinc finger
CDDcd000213.64E-8447No hitNo description
SMARTSM003362.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000211.47E-44790No hitNo description
SMARTSM003361.14890IPR000315B-box-type zinc finger
PfamPF062032.0E-16356398IPR010402CCT domain
PROSITE profilePS5101715.418356398IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGYICDFCGD QPSLVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
AEEKVSLCQN CDWMGHDAST SNSTHKRQTI NSYSGCPSSG ELSSIWSFFS QPDSAGESAC  120
EQELGLMSIS ENIENTSWDP TVNTISHNIA VVVEVNDDCN VDKGSGWTRT SIPEHRPAPQ  180
LLDQAAGSTY TSLPKFCPQT KYPGLSEDDL YDDFNIDEVD LNLENYEELF GVTLNHSEEL  240
LENGGIDSLF GTKDMSAADS TCQGAVAAEG SSIGLVNAIQ PACSNAASAD SVMSNKTDSI  300
LYFTTKHAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS IPSATRSDAV  360
MRYKEKKKTR KFEKRVRYAS RKARADVRKR VKGRFVKAGD AYDYDPLNQS RSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631424.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-147COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1U8LA830.0A0A1U8LA83_GOSHI; zinc finger protein CONSTANS-LIKE 9-like isoform X1
STRINGGorai.007G164600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-122B-box type zinc finger protein with CCT domain