PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03605_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 24597.8 Da    PI: 9.7185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03605_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-2076126255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp   + k  r++lg+f ta eAaka+++a+ kl+g
  Cotton_A_03605_BGI-A2_v1.0  76 HYRGVRRRP-WGKFAAEIRDP---NrKGSRIWLGTFETAIEAAKAYDRAAFKLRG 126
                                 7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-3275135IPR001471AP2/ERF domain
PfamPF008474.8E-1476126IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2376136IPR016177DNA-binding domain
CDDcd000187.81E-3276134No hitNo description
SMARTSM003801.4E-3776140IPR001471AP2/ERF domain
PROSITE profilePS5103224.48776134IPR001471AP2/ERF domain
PRINTSPR003671.0E-137788IPR001471AP2/ERF domain
PRINTSPR003671.0E-13116136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MASFGETSSA LELINQHLND FASMETFLSP PPTPQFHKQS TLSQRRPSIN VTIPPSKVEI  60
TSTATKAIEE HDEKRHYRGV RRRPWGKFAA EIRDPNRKGS RIWLGTFETA IEAAKAYDRA  120
AFKLRGSKAI LNFPLEIGNS NSTESQPSNK RKREEEEQER KVVKKEEITE NVTTTAGVCL  180
TPSNWKGFWD SEDMKGIFSI PPLSPLSPFG YSISGLAVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-3075137163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR9025460.0KR902546.1 Gossypium barbadense cultivar Pima90-53 transcription factor ERFb (ERFb) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017625491.11e-161PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ8VY904e-65EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A1U8K9651e-147A0A1U8K965_GOSHI; ethylene-responsive transcription factor 5-like
STRINGGorai.001G051200.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78932641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]