PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03604_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 195aa MW: 22140.9 Da PI: 6.2541 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 70 | 120 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg++++ +Aaka++ a+ k++g Cotton_A_03604_BGI-A2_v1.0 70 HYRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTYDSDVDAAKAYDCAAFKMRG 120 7********.**********9...6566**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-30 | 69 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-13 | 70 | 120 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-35 | 70 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-26 | 70 | 128 | No hit | No description |
PROSITE profile | PS51032 | 23.762 | 70 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 70 | 130 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-13 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-13 | 110 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MAATFEESTT LEFIRQHLLG DVATPDAFIN TLDFDLSHLQ PQSHQLPEIF THGVEPGPIT 60 KGPLCEEKRH YRGVRRRPWG KFAAEIRDPN RKGIRVWLGT YDSDVDAAKA YDCAAFKMRG 120 QKAILNFPLE AGEGSQPPAV TTGRKRRREK RVWLPESDVT SPGSSEMAWE VKEEEGELDD 180 DDRNGLSLLT RKHLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-27 | 69 | 134 | 4 | 69 | ATERF1 |
3gcc_A | 3e-27 | 69 | 134 | 4 | 69 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 147 | RKRRR |
2 | 143 | 149 | RKRRREK |
3 | 143 | 150 | RKRRREKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY181251 | 0.0 | AY181251.1 Gossypium hirsutum ethylene-responsive element binding factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643746.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
Swissprot | Q9LY05 | 4e-43 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A2P5WL50 | 1e-142 | A0A2P5WL50_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G051100.1 | 1e-124 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3229 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 3e-44 | ERF family protein |
Publications ? help Back to Top | |||
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