PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03591_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 181aa MW: 20720.7 Da PI: 4.5212

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03591_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.8e-19	13	63	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa + +g Cotton_A_03591_BGI-A2_v1.0 13 CKYRGVRMRS-WGKWVSEIREPKK---NSRIWLGTFPTAEMAARAHDAASIAVKG 63 79***998.******976...4******************9776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-12	13	63	IPR001471	AP2/ERF domain
CDD	cd00018	1.04E-31	13	73	No hit	No description
SuperFamily	SSF54171	2.81E-21	14	72	IPR016177	DNA-binding domain
SMART	SM00380	1.3E-35	14	77	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.8	14	71	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-31	14	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-11	15	26	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.6E-11	37	53	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MKPNASNNRE KSCKYRGVRM RSWGKWVSEI REPKKNSRIW LGTFPTAEMA ARAHDAASIA 60 VKGESAYLNF PELAHQLPRP ATCSHTDIQK AANEAAYGNG NGMVGEEEEE EEEEEEERFE 120 REATSSTTMS SEDSDLSMWF DLPDLSLEPD GTHHRFGFNS WWQHEQAGIH TDFQFEETMM 180 E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-17	14	71	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616573	1e-127	JX616573.1 Gossypium hirsutum clone NBRI_GE61335 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017633855.1	1e-134	PREDICTED: ethylene-responsive transcription factor ERF039-like
Swissprot	Q8LBQ7	3e-42	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A2P5WB99	1e-106	A0A2P5WB99_GOSBA; Uncharacterized protein
STRING	Gorai.001G049800.1	1e-105	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM185	28	283

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60490.1	2e-41	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]