PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03533_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 28049.4 Da PI: 6.3196 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.6 | 1.1e-16 | 54 | 99 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l Cotton_A_03533_BGI-A2_v1.0 54 RGGMSKEEEDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 99 67799*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 8 | 48 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 3.36E-21 | 12 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.014 | 12 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-12 | 14 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.606 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 54 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 56 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.13E-12 | 57 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MENRKEKKSQ PKRGLWKPEE DLILKNYVET YGLMRGGKSC RLRWKNYLRP NIKRGGMSKE 60 EEDLIIRMHK LLGNRWSLIA GRLPGRTDNE VKNYWNTHLN KKSLLGRKRK TLDSNNQHND 120 NMEDNHIENQ DSKKPRQSHD SDHHPIFNTT DGFDLDGNKQ EKDDESAAAW MERAVQFFNY 180 EYDLDYEMVG TPLMMHPDYS NFVFDEEPFT SYMDPFVLFE AFGTADYDVG LGIQSFLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-21 | 13 | 102 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX623855 | 2e-53 | JX623855.1 Gossypium hirsutum clone NBRI_GE71325 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645982.1 | 1e-176 | PREDICTED: transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 5e-56 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A1U8M5I9 | 1e-174 | A0A1U8M5I9_GOSHI; transcription factor MYB82-like | ||||
STRING | Gorai.001G044000.1 | 1e-172 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-58 | myb domain protein 82 |