PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_03394_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 804aa MW: 87879.8 Da PI: 6.0988

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_03394_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	123	178	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Cotton_A_03394_BGI-A2_v1.0 123 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 178 688999***********************************************999 PP
2	START	201.2	4.3e-63	315	536	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 ela++a++elvk+a+ +ep+W k e++n de+l++f++ + + +ea+r++gvv+ ++ lve+l+d++ +W e Cotton_A_03394_BGI-A2_v1.0 315 ELALAAMDELVKMAQTDEPLWIKNIeggrEMLNHDEYLRTFTPCIGlkpngFVTEASRETGVVIINSLALVETLMDSN-RWAE 396 5899************************************999999************************. PP T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS START 75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146 ++ + +t++vis+g galqlm+aelq lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ ++ +v ++ Cotton_A_03394_BGI-A2_v1.0 397 MFHcmiaRTSTTDVISNGmggtrnGALQLMNAELQILSPLVPvREVSFLRFCKQHAEGVWAVVDVSIDTIKESTT---FVTCR 476 ****************************************************************9999775...* PP ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +lpSg+++++++ng+skv+ veh++++++++h+l+r+l++sg+ +ga++wvatlqrqce+ Cotton_A_03394_BGI-A2_v1.0 477 RLPSGCVVQDMPNGYSKVICVEHAEYDESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 536 ********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-21	102	180	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-22	109	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	120	180	IPR001356	Homeobox domain
SMART	SM00389	9.9E-18	121	184	IPR001356	Homeobox domain
CDD	cd00086	1.28E-18	122	180	No hit	No description
Pfam	PF00046	1.3E-18	123	178	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	155	178	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	42.27	306	539	IPR002913	START domain
SuperFamily	SSF55961	7.69E-32	308	536	No hit	No description
CDD	cd08875	4.65E-122	310	535	No hit	No description
Pfam	PF01852	6.0E-55	315	536	IPR002913	START domain
SMART	SM00234	2.3E-48	315	536	IPR002913	START domain
SuperFamily	SSF55961	8.38E-24	564	797	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence Send to blast
MNFGGFIDDS SGTNEGLGGA RIIADIPYNT TTMPTGVFSQ PRLVSSSIPK NMFNSPGLSL 60 ALQQPNIDNQ GDETRLGENF EGNIGRRSRE EEHESRSGSD NMDGGSGDDH DPTTAAGDKP 120 PRKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSKRLC LETRQVKFWF QNRRTQMKTQ 180 LERHENSLLR QENDKLRAEN MSIRDAMRNP ICTNCGGPAI IGDMSLEEQH LRIENARLKD 240 ELDRVCALAG KFLGRPITGP PLPNSSLELG VGTNGTFGTT MATTTTLPLG HDALPTMVVP 300 SNRPATTLDR SMFLELALAA MDELVKMAQT DEPLWIKNIE GGREMLNHDE YLRTFTPCIG 360 LKPNGFVTEA SRETGVVIIN SLALVETLMD SNRWAEMFHC MIARTSTTDV ISNGMGGTRN 420 GALQLMNAEL QILSPLVPVR EVSFLRFCKQ HAEGVWAVVD VSIDTIKEST TFVTCRRLPS 480 GCVVQDMPNG YSKVICVEHA EYDESQVHQL YRPLLSSGMG FGAQRWVATL QRQCECLAIL 540 MSSTVPTRDH TAITASGRRS MLKLAQRMTD NFCAGVCAST VHKWNKLNAG NVDEDVRVMT 600 RKSIDDPGEP PGIVLSAATS VWLPVSPQRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK 660 GQDHGNCVSL LRASAMNANQ SSMLILQETC IDAAGSLVVY APVDIPAMHV VMNGGDSAYV 720 ALLPSGFAIV PDGPGSHGPI SNGHVNGNTG GGSSRVGGSL LTVAFQILVN SLPTAKLTVE 780 SVETVNNLIS CTVQKIKAAL QCES

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence Send to blast

MNFGGFIDDS SGTNEGLGGA RIIADIPYNT TTMPTGVFSQ PRLVSSSIPK NMFNSPGLSL  60
ALQQPNIDNQ GDETRLGENF EGNIGRRSRE EEHESRSGSD NMDGGSGDDH DPTTAAGDKP  120
PRKKRYHRHT PQQIQELEAL FKECPHPDEK QRLELSKRLC LETRQVKFWF QNRRTQMKTQ  180
LERHENSLLR QENDKLRAEN MSIRDAMRNP ICTNCGGPAI IGDMSLEEQH LRIENARLKD  240
ELDRVCALAG KFLGRPITGP PLPNSSLELG VGTNGTFGTT MATTTTLPLG HDALPTMVVP  300
SNRPATTLDR SMFLELALAA MDELVKMAQT DEPLWIKNIE GGREMLNHDE YLRTFTPCIG  360
LKPNGFVTEA SRETGVVIIN SLALVETLMD SNRWAEMFHC MIARTSTTDV ISNGMGGTRN  420
GALQLMNAEL QILSPLVPVR EVSFLRFCKQ HAEGVWAVVD VSIDTIKEST TFVTCRRLPS  480
GCVVQDMPNG YSKVICVEHA EYDESQVHQL YRPLLSSGMG FGAQRWVATL QRQCECLAIL  540
MSSTVPTRDH TAITASGRRS MLKLAQRMTD NFCAGVCAST VHKWNKLNAG NVDEDVRVMT  600
RKSIDDPGEP PGIVLSAATS VWLPVSPQRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK  660
GQDHGNCVSL LRASAMNANQ SSMLILQETC IDAAGSLVVY APVDIPAMHV VMNGGDSAYV  720
ALLPSGFAIV PDGPGSHGPI SNGHVNGNTG GGSSRVGGSL LTVAFQILVN SLPTAKLTVE  780
SVETVNNLIS CTVQKIKAAL QCES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU583497	0.0	EU583497.1 Gossypium hirsutum homeodomain protein GL2-like 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615505.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1U8M8Y3	0.0	A0A1U8M8Y3_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRING	Gorai.008G117200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]