PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03388_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 467aa    MW: 52677.8 Da    PI: 8.214
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03388_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.91.7e-21198250155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kp+l Wt+eLH+rF++a++ L Gse A Pk+il++m+v+gL  e+v SHLQk+Rl
  Cotton_A_03388_BGI-A2_v1.0 198 KPKLIWTNELHNRFLQAIDML-GSE-AYPKKILQVMNVPGLRKENVSSHLQKHRL 250
                                 79*******************.665.9***************************7 PP
2Response_reg53.11.8e-18181261109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vd + + + +l ++l++ gy +v +++++++al ++  +++++Dl+l+   + +md +ell++ir+ + ++piiv+++  
  Cotton_A_03388_BGI-A2_v1.0  18 VLLVDGDSTCLIILSKMLRSFGY-KVVTTKQATDALCIIrdQQHKIDLVLMEACLHDMDKYELLETIRNIS-SIPIIVMSTDY 98 
                                 89*********************.***************555555************************99.*********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                 + + +l  l  Ga  +l+Kp+ ++++ +
  Cotton_A_03388_BGI-A2_v1.0  99 DRNSVLGSLFKGATLHLEKPITMDDIKN 126
                                 ***********************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.6E-2415165No hitNo description
SuperFamilySSF521725.55E-2315131IPR011006CheY-like superfamily
SMARTSM004482.4E-1316128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011028.50117132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.4E-1418126IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.05E-1619132No hitNo description
SuperFamilySSF466899.85E-15195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-22197254IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-19198250IPR006447Myb domain, plants
SuperFamilySSF578505.18E-21378434No hitNo description
Gene3DG3DSA:3.30.40.104.9E-19382431IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001624.24E-12385431No hitNo description
PfamPF136391.0E-13385428IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.858386428IPR001841Zinc finger, RING-type
SMARTSM001848.9E-9386427IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAISYESNMN NVYAGVTVLL VDGDSTCLII LSKMLRSFGY KVVTTKQATD ALCIIRDQQH  60
KIDLVLMEAC LHDMDKYELL ETIRNISSIP IIVMSTDYDR NSVLGSLFKG ATLHLEKPIT  120
MDDIKNLWQF TLIKGQEINV PIVEAKSCTK EVPSMESALG VVVDGRRNLR DEKRKRPLEV  180
ENDKEGDNCD QGSSTLKKPK LIWTNELHNR FLQAIDMLGS EAYPKKILQV MNVPGLRKEN  240
VSSHLQKHRL LLKRQQEAIQ NTISSTVSQA ASHHALSEFS PRNGFHRFTD TAQTTTVKKM  300
MSSGMNLITT AIAFATSVIF IVFICSRIIC GRIRGSQSRQ MFHRQSEIDL QQAEEQIRGL  360
EPVVVATIPT LRFNSETFTS IEDTQCSICL GDYQEKQVLR IMPKCGHNFH LSCIDLWIRK  420
QSTCPVCRLP LQDIGETKQM RAATFRTMIT LPSPQCSSSS TNPDMNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17197254462ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704436.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLA0A2P5YDF90.0A0A2P5YDF9_GOSBA; Uncharacterized protein
STRINGGorai.008G116600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1721079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.17e-43response regulator 1