PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03348_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17537.7 Da PI: 6.7866 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.8e-17 | 14 | 64 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr+++ +g+Wv+eIr+p g + r +lg++ t+e Aa a++ a +l+ Cotton_A_03348_BGI-A2_v1.0 14 TKYKGVRRRR-WGKWVSEIRVP---G-SqERLWLGSYSTPEAAAIAHDLAFYCLRR 64 69*****777.**********8...4.35*********************999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.73E-24 | 14 | 74 | No hit | No description |
Pfam | PF00847 | 5.6E-10 | 14 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-26 | 15 | 80 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-25 | 15 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 15 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-17 | 15 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-8 | 16 | 27 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-8 | 38 | 54 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MSGFAAEERS SGETKYKGVR RRRWGKWVSE IRVPGSQERL WLGSYSTPEA AAIAHDLAFY 60 CLRRPSSLTA LNFPSMLPPY VSPNMSPKSI QRAASDAGMA VDAAHMIRQE TRATGNVMSV 120 DMGVETEPWD NEHRSSCGSW EKQGEPLSIS VDDYLYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016675456.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF020-like | ||||
Refseq | XP_017625828.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | Q9C9I8 | 5e-47 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A1U8IB59 | 1e-113 | A0A1U8IB59_GOSHI; ethylene-responsive transcription factor ERF020-like | ||||
TrEMBL | A0A2P5WXZ7 | 1e-113 | A0A2P5WXZ7_GOSBA; Uncharacterized protein | ||||
STRING | EOY17069 | 2e-65 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3865 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 6e-42 | ERF family protein |
Publications ? help Back to Top | |||
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