PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03348_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 157aa    MW: 17537.7 Da    PI: 6.7866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03348_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.8e-171464155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                ++ykGVr+++ +g+Wv+eIr+p   g +  r +lg++ t+e Aa a++ a  +l+ 
  Cotton_A_03348_BGI-A2_v1.0 14 TKYKGVRRRR-WGKWVSEIRVP---G-SqERLWLGSYSTPEAAAIAHDLAFYCLRR 64
                                69*****777.**********8...4.35*********************999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.73E-241474No hitNo description
PfamPF008475.6E-101463IPR001471AP2/ERF domain
SMARTSM003808.6E-261580IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-251575IPR001471AP2/ERF domain
PROSITE profilePS5103221.4561574IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-171574IPR016177DNA-binding domain
PRINTSPR003671.6E-81627IPR001471AP2/ERF domain
PRINTSPR003671.6E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSGFAAEERS SGETKYKGVR RRRWGKWVSE IRVPGSQERL WLGSYSTPEA AAIAHDLAFY  60
CLRRPSSLTA LNFPSMLPPY VSPNMSPKSI QRAASDAGMA VDAAHMIRQE TRATGNVMSV  120
DMGVETEPWD NEHRSSCGSW EKQGEPLSIS VDDYLYF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675456.11e-114PREDICTED: ethylene-responsive transcription factor ERF020-like
RefseqXP_017625828.11e-114PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I85e-47ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1U8IB591e-113A0A1U8IB59_GOSHI; ethylene-responsive transcription factor ERF020-like
TrEMBLA0A2P5WXZ71e-113A0A2P5WXZ7_GOSBA; Uncharacterized protein
STRINGEOY170692e-65(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.16e-42ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]