PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03321_BGI-A2_v1.0
Common NameF383_23293
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YA
Protein Properties Length: 315aa    MW: 34638.8 Da    PI: 8.9157
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03321_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA95.18e-30149208158
                   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk...pylheSRhkhAlrRpRgsgGrF 58 
                                 +ep+YVNaKQy++Il+RRq Rak+e ekk+ +k rk   pylheSRh hA+rR+RgsgGrF
  Cotton_A_03321_BGI-A2_v1.0 149 EEPVYVNAKQYHGILRRRQIRAKAELEKKV-IKVRKvepPYLHESRHLHAMRRARGSGGRF 208
                                 69***************************8.776665669********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-34147211IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.661148211IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.5E-26150208IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-22151173IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860153173IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.4E-22185208IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPAKPRNEDQ RMHHGAQSVL NSTASLEPWW KAVGIDLLGE AASKSTSAEK KNGPTADGDG  60
RNGHDEQYLK HVPSAALKHV PSAAPLTLVE HLEPNSQMEL AGHSIVLKSY PCSDSQYSGI  120
QASYGPQIMV SPLYGMHHAR MPLPLQMEEE PVYVNAKQYH GILRRRQIRA KAELEKKVIK  180
VRKVEPPYLH ESRHLHAMRR ARGSGGRFLN KKKLDDHITS PNSEKGMNSD ENISAKSAYL  240
SGFECLSSSG TGNLSSFYGQ QEGNVSLVKD LHEAQPLTNG TPHLSSNDAE TGNYFHQQRD  300
MVQGNGAQHG SPSIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-19149223274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5829181e-73JX582918.1 Gossypium hirsutum clone NBRI_GE15843 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626398.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A0B0NZQ80.0A0A0B0NZQ8_GOSAR; Nuclear transcription factor Y subunit A-1-like protein
STRINGGorai.004G066000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM160191014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-40nuclear factor Y, subunit A1